Inheritance diagram for LocARNA::Ribofit_will2014:

Collaboration diagram for LocARNA::Ribofit_will2014:

Public Member Functions
	Ribofit_will2014 ()
	Construct.

	~Ribofit_will2014 ()
	destructor

Public Member Functions inherited from LocARNA::Ribofit
	Ribofit (const char *alphabet)
	Construct.

virtual	~Ribofit ()
	virtual destructor

const Alphabet< char > &	alphabet () const

const matrix_t &	get_basematch_scores (double identity, matrix_t &basematch_scores) const
	Get base match scores. More...

Protected Member Functions
double	basematch_score (char i, char j, double identity) const
	ribofit base match score for specific identity More...

double	arcmatch_score (char i, char j, char k, char l, double identity) const
	ribofit arc match score for specific identity More...

Additional Inherited Members
Public Types inherited from LocARNA::Ribofit
typedef Matrix< double >	matrix_t
	type of a matrix

Protected Attributes inherited from LocARNA::Ribofit
Alphabet< char >	alphabet_
	alphabet of base names as characters

Member Function Documentation

double LocARNA::Ribofit_will2014::arcmatch_score	(	char	i,
		char	j,
		char	k,
		char	l,
		double	identity
	)		const

inlineprotectedvirtual

ribofit arc match score for specific identity

Parameters

i	left character of first arc
j	right character of first arc
k	left character of second arc
l	right character of second arc
identity	sequence identity

double LocARNA::Ribofit_will2014::basematch_score	(	char	i,
		char	j,
		double	identity
	)		const

inlineprotectedvirtual

ribofit base match score for specific identity

Parameters

The documentation for this class was generated from the following files:

Public Member Functions