LocARNA::Matrix< T > Class Template Reference

simple 2D matrix class, provides access via operator (int,int) More...

#include <matrix.hh>

Collaboration diagram for LocARNA::Matrix< T >:

Public Types
typedef T	elem_t
	type of elements
typedef std::vector< elem_t >::size_type	size_type
	size type (from underlying vector)
typedef std::pair< size_type, size_type >	size_pair_type
	type for pair of sizes

Public Member Functions
	Matrix ()
	Matrix (size_type xdim, size_type ydim, const elem_t *from=0L)
size_pair_type	sizes () const
void	resize (size_type xdim, size_type ydim)
const elem_t &	operator() (size_type i, size_type j) const
elem_t &	operator() (size_type i, size_type j)
const elem_t	get (size_type i, size_type j) const
void	set (size_type i, size_type j, const elem_t &x)
void	fill (const elem_t &val)
	Fill the whole matrix with the given value. More...
void	clear ()
template<class UnaryOperator >
void	transform (UnaryOperator f)

Protected Member Functions
size_type	addr (size_type i, size_type j) const

Protected Attributes
std::vector< elem_t >	mat_
	vector storing the matrix entries
size_type	xdim_
	first dimension
size_type	ydim_
	second dimension

Detailed Description

template<class T>
class LocARNA::Matrix< T >

simple 2D matrix class, provides access via operator (int,int)

Constructor & Destructor Documentation

template<class T>

LocARNA::Matrix< T >::Matrix ( )

inline

Empty constructor

template<class T>

LocARNA::Matrix< T >::Matrix ( size_type  xdim, size_type  ydim, const elem_t *  from = 0L  )

inline

Construct with dimensions, optionally initialize from array

Parameters

xdim	first dimension of matrix
ydim	second dimension of matrix
from	pointer to array of elements

Note

if from given and !=0 initialize from array from

Member Function Documentation

template<class T>

size_type LocARNA::Matrix< T >::addr ( size_type  i, size_type  j  ) const

inlineprotected

Computes address/index in 1D vector from 2D matrix indices

Parameters

i	first index
j	second index

Returns

index in vector

Note

this method is used for all internal access to the vector mat_

template<class T>

void LocARNA::Matrix< T >::clear ( )

inline

Clear the matrix

Postcondition

the matrix is resized to dimensions (0,0)

Note

behaves like std::vector::clear()

template<class T>

void LocARNA::Matrix< T >::fill ( const elem_t &  val )

inline

Fill the whole matrix with the given value.

Parameters

val	value assigned to each entry

Postcondition

all matrix entries are set to val

template<class T>

const elem_t LocARNA::Matrix< T >::get ( size_type  i, size_type  j  ) const

inline

Read access to matrix element

Parameters

i
j

Returns

entry (i,j)

template<class T>

const elem_t& LocARNA::Matrix< T >::operator() ( size_type  i, size_type  j  ) const

inline

Read access to matrix element

Parameters

i
j

Returns

entry (i,j)

template<class T>

elem_t& LocARNA::Matrix< T >::operator() ( size_type  i, size_type  j  )

inline

Read/write access to matrix element

Parameters

i
j

Returns

reference to entry (i,j)

template<class T>

void LocARNA::Matrix< T >::resize ( size_type  xdim, size_type  ydim  )

inline

Resize both dimensions

Parameters

xdim	first dimension
ydim	second dimension

template<class T>

void LocARNA::Matrix< T >::set ( size_type  i, size_type  j, const elem_t &  x  )

inline

Write access to matrix element

Parameters

i
j
x	element value

template<class T>

size_pair_type LocARNA::Matrix< T >::sizes ( ) const

inline

Access size

Returns

size of matrix as pair of dimensions

template<class T>

template<class UnaryOperator >

void LocARNA::Matrix< T >::transform ( UnaryOperator  f )

inline

Transform matrix in place due to applying a given function to each element

Parameters

f	function object

Postcondition

All matrix entries are changed from x to f(x)

Note

applies f via in place std::transform to all matrix entries

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The documentation for this class was generated from the following files:

• src/LocARNA/aligner_impl.hh
• src/LocARNA/matrix.hh