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LocARNA-1.8.11
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This is the complete list of members for LocARNA::RnaDataImpl, including all inherited members.
| arc_2_probs_ | LocARNA::RnaDataImpl | |
| arc_prob_matrix_t typedef | LocARNA::RnaDataImpl | |
| arc_probs_ | LocARNA::RnaDataImpl | |
| consensus_probability(double pA, double pB, size_t sizeA, size_t sizeB, double p_expA, double p_expB) const | LocARNA::RnaDataImpl | |
| drop_worst_bps(size_t keep) | LocARNA::RnaDataImpl | |
| has_stacking_ | LocARNA::RnaDataImpl | |
| init_as_consensus_dot_plot(const Alignment::edges_t &edges, const RnaData &rna_dataA, const RnaData &rna_dataB, double p_expA, double p_expB, bool stacking) | LocARNA::RnaDataImpl | |
| init_from_fixed_structure(const SequenceAnnotation &structure, bool stacking) | LocARNA::RnaDataImpl | |
| init_from_rna_ensemble(const RnaEnsemble &rna_ensemble, const PFoldParams &pfoldparams) | LocARNA::RnaDataImpl | |
| p_bpcut_ | LocARNA::RnaDataImpl | |
| read_pp_arc_probabilities(std::istream &in) | LocARNA::RnaDataImpl | |
| read_pp_sequence(std::istream &in) | LocARNA::RnaDataImpl | |
| RnaDataImpl(RnaData *self, const RnaData &rna_dataA, const RnaData &rna_dataB, const Alignment::edges_t &alignment, double p_expA, double p_expB) | LocARNA::RnaDataImpl | |
| RnaDataImpl(RnaData *self, double p_bpcut) | LocARNA::RnaDataImpl | |
| self_ | LocARNA::RnaDataImpl | |
| sequence_ | LocARNA::RnaDataImpl | |
| write_pp_arc_probabilities(std::ostream &out, double p_outbpcut, bool stacking) const | LocARNA::RnaDataImpl | |
| write_pp_sequence(std::ostream &out) const | LocARNA::RnaDataImpl |
1.8.11
