"enum class" of gaps in alignment edges More...

#include <aux.hh>

Collaboration diagram for LocARNA::Gap:

Static Public Attributes
static size_t	size =0
	< index of enumeration value More...

static const Gap	regular = Gap(Gap::size++)
	regular gap

static const Gap	loop = Gap(Gap::size++)
	gap from inserting/deleting a loop (in sparse)

static const Gap	locality = Gap(Gap::size++)
	gap outside of the locally aligned region (sequence and structure local alignment)

static const Gap	other = Gap(Gap::size++)
	other gaps

Detailed Description

"enum class" of gaps in alignment edges

Constructor & Destructor Documentation

LocARNA::Gap::Gap ( size_t idx )

inlineexplicit

init from 0-based index

Parameters

idx index

bool LocARNA::Gap::operator!= ( const Gap & x ) const

inline

inequality

Parameters

x operand

bool LocARNA::Gap::operator== ( const Gap & x ) const

inline

equality

Parameters

x operand

size_t LocARNA::Gap::size =0

static

< index of enumeration value

enum size

The documentation for this class was generated from the following files: