LocARNA::ConfusionMatrix::CanonicalBPFilter Class Reference

base pair filter to allow only canonical base pairs More...

#include <confusion_matrix.hh>

Inheritance diagram for LocARNA::ConfusionMatrix::CanonicalBPFilter:

Collaboration diagram for LocARNA::ConfusionMatrix::CanonicalBPFilter:

Public Member Functions
	CanonicalBPFilter (const std::string &sequence)
	constructor More...
	~CanonicalBPFilter ()
	d'tor
bool	operator() (size_t i, size_t j) const
	check for canonical base pair More...
Public Member Functions inherited from LocARNA::ConfusionMatrix::BPFilter
virtual bool	operator() (const bp_t &bp) const

Detailed Description

base pair filter to allow only canonical base pairs

Constructor & Destructor Documentation

LocARNA::ConfusionMatrix::CanonicalBPFilter::CanonicalBPFilter ( const std::string &  sequence )

inlineexplicit

constructor

Parameters

sequence

rna sequence

Member Function Documentation

bool LocARNA::ConfusionMatrix::CanonicalBPFilter::operator() ( size_t  i, size_t  j  ) const

inlinevirtual

check for canonical base pair

Parameters

i	left end
j	right end

Returns

whether (i,j) forms a canonical basepair in the object's sequence

Reimplemented from LocARNA::ConfusionMatrix::BPFilter.

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The documentation for this class was generated from the following file:

• src/LocARNA/confusion_matrix.hh