LocARNA::ConfusionMatrix::BPMinLoopSizeFilter Class Reference

loop size base pair filter More...

#include <confusion_matrix.hh>

Inheritance diagram for LocARNA::ConfusionMatrix::BPMinLoopSizeFilter:

Collaboration diagram for LocARNA::ConfusionMatrix::BPMinLoopSizeFilter:

Public Member Functions
	BPMinLoopSizeFilter (size_t mls)
	constructor More...
	~BPMinLoopSizeFilter ()
	d'tor
bool	operator() (size_t i, size_t j) const
	check for minimum loop size More...
Public Member Functions inherited from LocARNA::ConfusionMatrix::BPFilter
virtual bool	operator() (const bp_t &bp) const

Detailed Description

loop size base pair filter

Constructor & Destructor Documentation

LocARNA::ConfusionMatrix::BPMinLoopSizeFilter::BPMinLoopSizeFilter ( size_t  mls )

inlineexplicit

constructor

Parameters

mls	minimum loop size

Member Function Documentation

bool LocARNA::ConfusionMatrix::BPMinLoopSizeFilter::operator() ( size_t  i, size_t  j  ) const

inlinevirtual

check for minimum loop size

Parameters

i	left end
j	right end

Returns

whether bp (i,j) satisfies mls

Reimplemented from LocARNA::ConfusionMatrix::BPFilter.

---

The documentation for this class was generated from the following file:

• src/LocARNA/confusion_matrix.hh