Provides a modified view on the scoring.
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#include <aligner_impl.hh>
Provides a modified view on the scoring.
This view is used when computing length normalized local alignment.
- See also
- UnmodifiedScoringView
LocARNA::AlignerImpl::ModifiedScoringView::ModifiedScoringView |
( |
const AlignerImpl * |
aligner_impl | ) |
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|
inlineexplicit |
Construct for Aligner object
- Parameters
-
aligner_impl | The aligner implementation object |
- Note
- scoring object in aligner has to be modified by lambda already
infty_score_t LocARNA::AlignerImpl::ModifiedScoringView::D |
( |
const Arc & |
a, |
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const Arc & |
b |
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) |
| const |
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inline |
View on matrix D
- Parameters
-
- Returns
- modified D matrix entry for match of a and b
View on matrix D
- Parameters
-
- Returns
- modified D matrix entry for arc match am
const Scoring* LocARNA::AlignerImpl::ModifiedScoringView::scoring |
( |
| ) |
const |
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inline |
Get scoring object
- Returns
- modified scoring object of aligner
void LocARNA::AlignerImpl::ModifiedScoringView::set_lambda |
( |
score_t |
lambda | ) |
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|
inline |
Change modification factor lambda
- Parameters
-
lambda | modification factor |
The documentation for this class was generated from the following file: