cpsp::scth::SideChainDegOptions Class Reference

#include <side_chain_optdeg_option.h>

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Detailed Description

Definition at line 25 of file side_chain_optdeg_option.h.

Public Member Functions
void	setThreshold (int)
	SideChainDegOptions ()
Data Fields
double	Cutoff
int	Length
int	maxSteps
std::string	RandomizerPath
int	Seed
SideChainOptions	sideChainOptions
std::string	startSeq
bool	Stat
float	TEMPERATURE
unsigned int	tgtDeg
int	Threshold
int	timeLimit
bool	verboseOut

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Constructor & Destructor Documentation

cpsp::scth::SideChainDegOptions::SideChainDegOptions

(

)

Definition at line 22 of file side_chain_optdeg_option.cpp.

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Member Function Documentation

void cpsp::scth::SideChainDegOptions::setThreshold

(

int

th

)

Set the accepted solutions one more than the threshold.

Definition at line 38 of file side_chain_optdeg_option.cpp.

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Field Documentation

double cpsp::scth::SideChainDegOptions::Cutoff

The cutoff value that is necessary for the MonteCarlo Algorithm.

break after such many steps

Definition at line 52 of file side_chain_optdeg_option.h.

int cpsp::scth::SideChainDegOptions::Length

The length of the sequence.

Definition at line 35 of file side_chain_optdeg_option.h.

int cpsp::scth::SideChainDegOptions::maxSteps

break after this time limit

Definition at line 55 of file side_chain_optdeg_option.h.

std::string cpsp::scth::SideChainDegOptions::RandomizerPath

The path directory of the HPrand binray in order to generate a random sequence.

Definition at line 68 of file side_chain_optdeg_option.h.

int cpsp::scth::SideChainDegOptions::Seed

Seeds number.

Definition at line 32 of file side_chain_optdeg_option.h.

SideChainOptions cpsp::scth::SideChainDegOptions::sideChainOptions

Side chain option.

Definition at line 29 of file side_chain_optdeg_option.h.

std::string cpsp::scth::SideChainDegOptions::startSeq

The first sequence to start with.

Definition at line 44 of file side_chain_optdeg_option.h.

bool cpsp::scth::SideChainDegOptions::Stat

Give statistics, default is true.

Definition at line 62 of file side_chain_optdeg_option.h.

float cpsp::scth::SideChainDegOptions::TEMPERATURE

temperature for metropolis local search

Definition at line 47 of file side_chain_optdeg_option.h.

unsigned int cpsp::scth::SideChainDegOptions::tgtDeg

Target degneracy.

Definition at line 59 of file side_chain_optdeg_option.h.

int cpsp::scth::SideChainDegOptions::Threshold

The threshold of suitable seeds.

Definition at line 38 of file side_chain_optdeg_option.h.

int cpsp::scth::SideChainDegOptions::timeLimit

Definition at line 56 of file side_chain_optdeg_option.h.

bool cpsp::scth::SideChainDegOptions::verboseOut

Verbose output, default is false.

Definition at line 65 of file side_chain_optdeg_option.h.

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The documentation for this class was generated from the following files:

• src/cpsp/SideChain/options/side_chain_optdeg_option.h
• src/cpsp/SideChain/options/side_chain_optdeg_option.cpp