cpsp::scth::SideChainOptions Class Reference

#include <chain_option.h>

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Detailed Description

Definition at line 28 of file chain_option.h.

Public Member Functions
	SideChainOptions (const SideChainOptions &rhs)
	SideChainOptions ()
	~SideChainOptions ()
Data Fields
bool	BreakSym
cpsp::HCoreDatabase *	coreDB
std::string *	Description
bool	Draw
std::string *	JmlHome
int	Output
std::string *	Sequence
int	SolutionsNum
bool	verbose
std::string *	ViewerHome
bool	withOutput

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Constructor & Destructor Documentation

cpsp::scth::SideChainOptions::SideChainOptions

(

)

The constructor.

Definition at line 22 of file chain_option.cpp.

cpsp::scth::SideChainOptions::SideChainOptions

(

const SideChainOptions &

rhs

)

Definition at line 44 of file chain_option.cpp.

cpsp::scth::SideChainOptions::~SideChainOptions

(

)

The destructor.

Definition at line 68 of file chain_option.cpp.

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Field Documentation

bool cpsp::scth::SideChainOptions::BreakSym

A boolean variable to introduce breaking the symmetry or not, it is true by default

Definition at line 45 of file chain_option.h.

cpsp::HCoreDatabase* cpsp::scth::SideChainOptions::coreDB

the H-core database the threading will work with

Definition at line 57 of file chain_option.h.

std::string* cpsp::scth::SideChainOptions::Description

The description of the lattice.

Definition at line 65 of file chain_option.h.

bool cpsp::scth::SideChainOptions::Draw

A boolean variable to decide whether to draw or not

Definition at line 40 of file chain_option.h.

std::string* cpsp::scth::SideChainOptions::JmlHome

The directory of the jmlHome.

Definition at line 68 of file chain_option.h.

int cpsp::scth::SideChainOptions::Output

The output style 0 if the output wanted to be ordinary 1 if it should be moves Other if it should be moves for drawing

Definition at line 35 of file chain_option.h.

std::string* cpsp::scth::SideChainOptions::Sequence

The input sequence of amino acids.

Definition at line 62 of file chain_option.h.

int cpsp::scth::SideChainOptions::SolutionsNum

The number of desired solutions.

Definition at line 54 of file chain_option.h.

bool cpsp::scth::SideChainOptions::verbose

do verbose output

Definition at line 51 of file chain_option.h.

std::string* cpsp::scth::SideChainOptions::ViewerHome

The directory of the side chain viewer binary, in order to view directly.

Definition at line 71 of file chain_option.h.

bool cpsp::scth::SideChainOptions::withOutput

This option is useful for generating the protein like sequences binary, it means the program will be in the silent mode.

Definition at line 48 of file chain_option.h.

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The documentation for this class was generated from the following files:

• src/cpsp/SideChain/options/chain_option.h
• src/cpsp/SideChain/options/chain_option.cpp