LocARNA::AlignerImpl::UnmodifiedScoringView Class Reference

Provides the standard view on the scoring. More...

#include <aligner_impl.hh>

List of all members.

Public Member Functions
	UnmodifiedScoringView (const AlignerImpl *aligner_impl)
const Scoring *	scoring () const
infty_score_t	D (const Arc &a, const Arc &b) const
infty_score_t	D (const ArcMatch &am) const

---

Detailed Description

Provides the standard view on the scoring.

See also:

ModifiedScoringView

Note:

We use a template-based scheme to switch between use of the unmodified score and the modified score without run-time penalty for the standard case the mechanism is used for methods align_noex and trace_noex

---

Constructor & Destructor Documentation

LocARNA::AlignerImpl::UnmodifiedScoringView::UnmodifiedScoringView

(

const AlignerImpl *

aligner_impl

)

[inline, explicit]

Construct for Aligner object

Parameters:

aligner_impl

the aligner implementation object

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Member Function Documentation

infty_score_t LocARNA::AlignerImpl::UnmodifiedScoringView::D	(	const Arc &	a,
		const Arc &	b
	)		const [inline]

View on matrix D

Parameters:

a	arc in A
b	arc in B

Returns:

D matrix entry for match of a and b

infty_score_t LocARNA::AlignerImpl::UnmodifiedScoringView::D

(

const ArcMatch &

am

)

const [inline]

View on matrix D

Parameters:

am

arc match

Returns:

D matrix entry for arc match am

const Scoring* LocARNA::AlignerImpl::UnmodifiedScoringView::scoring

(

)

const [inline]

Get scoring object

Returns:

(unmodified) scoring object of aligner

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The documentation for this class was generated from the following file:

• src/LocARNA/aligner_impl.hh