LocARNA::ArcMatch Class Reference

Represents a match of two base pairs (arc match) More...

#include <arc_matches.hh>

List of all members.

Public Types
typedef std::vector< int > ::size_type	size_type
	size type
typedef size_type	idx_type
	arc match index
typedef BasePairs__Arc	Arc
	arc
Public Member Functions
	ArcMatch (const Arc *arcA, const Arc *arcB, idx_type idx)
const Arc &	arcA () const
const Arc &	arcB () const
idx_type	idx () const

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Detailed Description

Represents a match of two base pairs (arc match)

Maintains pointers to the single arcs (in the base pairs strucures) and an arc match index.

See also:

ArcMatches

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Constructor & Destructor Documentation

LocARNA::ArcMatch::ArcMatch	(	const Arc *	arcA,
		const Arc *	arcB,
		idx_type	idx
	)		[inline]

Construct with member values

Parameters:

arcA	arc in B
arcB	arc in A
idx	index

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Member Function Documentation

const Arc& LocARNA::ArcMatch::arcA

(

)

const [inline]

Read access

Returns:

the matched arc in A

const Arc& LocARNA::ArcMatch::arcB

(

)

const [inline]

Read access

Returns:

the matched arc in B

idx_type LocARNA::ArcMatch::idx

(

)

const [inline]

Read access

Returns:

(unique) index of arc match

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The documentation for this class was generated from the following file:

• src/LocARNA/arc_matches.hh