LocARNA-1.8.11
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This is the complete list of members for LocARNA::TraceRange, including all inherited members.
consensus_cost(size_type i, size_type j, const std::vector< TraceRange > &trs) const | LocARNA::TraceRange | |
max_col(size_t i) const | LocARNA::TraceRange | inline |
max_col_vector_ | LocARNA::TraceRange | protected |
min_col(size_t i) const | LocARNA::TraceRange | inline |
min_col_vector_ | LocARNA::TraceRange | protected |
print_debug(std::ostream &out) const | LocARNA::TraceRange | |
remove_common_gaps(const SeqEntry &aliA, const SeqEntry &aliB) | LocARNA::TraceRange | static |
rows() const | LocARNA::TraceRange | inline |
SeqEntry typedef | LocARNA::TraceRange | |
seqentry_pair_t typedef | LocARNA::TraceRange | |
TraceRange() | LocARNA::TraceRange | inlineprotected |
TraceRange(const SeqEntry &pseqA, const SeqEntry &pseqB, const SeqEntry &aliA, const SeqEntry &aliB, size_type delta) | LocARNA::TraceRange | |
TraceRange(size_type lenA, size_type lenB, const std::vector< TraceRange > &trs, size_type delta) | LocARNA::TraceRange |