LocARNA::SequenceAnnotation Member List

This is the complete list of members for LocARNA::SequenceAnnotation, including all inherited members.

annotation_string(size_t i) const	LocARNA::SequenceAnnotation	inline
clashing_names(const AlignmentEdges &edges, const SequenceAnnotation &annotationA, const SequenceAnnotation &annotationB) (defined in LocARNA::SequenceAnnotation)	LocARNA::SequenceAnnotation	static
duplicate_names() const (defined in LocARNA::SequenceAnnotation)	LocARNA::SequenceAnnotation
empty() const	LocARNA::SequenceAnnotation	inline
empty_instance()	LocARNA::SequenceAnnotation	inlinestatic
is_neutral(const name_t &name)	LocARNA::SequenceAnnotation	static
is_neutral_char(char c)	LocARNA::SequenceAnnotation	inlinestatic
is_neutral_pos(size_t i) const	LocARNA::SequenceAnnotation
length() const	LocARNA::SequenceAnnotation	inline
name(size_t i) const	LocARNA::SequenceAnnotation
name_length() const	LocARNA::SequenceAnnotation	inline
push_back_name(const name_t &name)	LocARNA::SequenceAnnotation
SequenceAnnotation(size_type name_length=0)	LocARNA::SequenceAnnotation	inlineexplicit
SequenceAnnotation(const std::string &annotation_string)	LocARNA::SequenceAnnotation	explicit
SequenceAnnotation(const std::vector< std::string > &annotation_strings)	LocARNA::SequenceAnnotation	explicit
SequenceAnnotation(const AlignmentEdges &edges, const SequenceAnnotation &annotationA, const SequenceAnnotation &annotationB)	LocARNA::SequenceAnnotation
single_string(char sep='#') const	LocARNA::SequenceAnnotation