LocARNA-1.8.11
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LocARNA
Ribosum
LocARNA::Ribosum Member List
This is the complete list of members for
LocARNA::Ribosum
, including all inherited members.
alphabet
() const
LocARNA::Ribosum
inline
alphabet_type
typedef
LocARNA::Ribosum
protected
am
LocARNA::Ribosum
protected
arcmatch_score
(char i, char j, char k, char l) const
LocARNA::Ribosum
inline
arcname_alphabet
LocARNA::Ribosum
protected
basematch_score
(char i, char j) const
LocARNA::Ribosum
inline
basename_alphabet
LocARNA::Ribosum
protected
bm
LocARNA::Ribosum
protected
char_basename_alphabet
LocARNA::Ribosum
protected
get_arcmatch_scores
() const
LocARNA::Ribosum
inline
get_basematch_scores
() const
LocARNA::Ribosum
inline
get_name
() const
LocARNA::Ribosum
inline
make_char_alphabet
() const
LocARNA::Ribosum
protected
matrix_t
typedef
LocARNA::Ribosum
name
LocARNA::Ribosum
protected
operator<<
(std::ostream &out, const Ribosum &ribosum)
LocARNA::Ribosum
friend
read_matrix
(std::istream &in, matrix_t &mat, const alphabet_type &names) const
LocARNA::Ribosum
protected
read_ribosum
(std::istream &in)
LocARNA::Ribosum
protected
Ribosum
()
LocARNA::Ribosum
protected
Ribosum
(const std::string &filename)
LocARNA::Ribosum
explicit
set_arcname_alphabet
(const std::string a[])
LocARNA::Ribosum
inline
protected
set_basename_alphabet
(const std::string a[])
LocARNA::Ribosum
inline
protected
string_alphabet
() const
LocARNA::Ribosum
inline
write_matrix
(std::ostream &out, const matrix_t &mat, const alphabet_type &alph) const
LocARNA::Ribosum
protected
~Ribosum
()
LocARNA::Ribosum
virtual
Generated on Mon Aug 15 2016 17:40:22 for LocARNA-1.8.11 by
1.8.11