LocARNA-1.8.11
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LocARNA
AlignerParams
LocARNA::AlignerParams Member List
This is the complete list of members for
LocARNA::AlignerParams
, including all inherited members.
Aligner
(defined in
LocARNA::AlignerParams
)
LocARNA::AlignerParams
friend
AlignerImpl
(defined in
LocARNA::AlignerParams
)
LocARNA::AlignerParams
friend
AlignerParams
()
LocARNA::AlignerParams
inline
protected
arc_matches
(const ArcMatches &arc_matches)
LocARNA::AlignerParams
inline
arc_matches_
LocARNA::AlignerParams
protected
constraints
(const AnchorConstraints &constraints)
LocARNA::AlignerParams
inline
constraints_
LocARNA::AlignerParams
protected
DO_TRACE
(bool DO_TRACE)
LocARNA::AlignerParams
inline
DO_TRACE_
LocARNA::AlignerParams
protected
free_endgaps
(const std::string &free_endgaps)
LocARNA::AlignerParams
inline
free_endgaps_
LocARNA::AlignerParams
protected
max_diff_am
(int max_diff_am)
LocARNA::AlignerParams
inline
max_diff_am_
LocARNA::AlignerParams
protected
max_diff_at_am
(int max_diff_at_am)
LocARNA::AlignerParams
inline
max_diff_at_am_
LocARNA::AlignerParams
protected
min_am_prob
(double min_am_prob)
LocARNA::AlignerParams
inline
min_am_prob_
LocARNA::AlignerParams
protected
min_bm_prob
(double min_bm_prob)
LocARNA::AlignerParams
inline
min_bm_prob_
LocARNA::AlignerParams
protected
no_lonely_pairs
(bool no_lonely_pairs)
LocARNA::AlignerParams
inline
no_lonely_pairs_
LocARNA::AlignerParams
protected
scoring
(const Scoring &scoring)
LocARNA::AlignerParams
inline
scoring_
LocARNA::AlignerParams
protected
seqA
(const Sequence &seqA)
LocARNA::AlignerParams
inline
seqA_
LocARNA::AlignerParams
protected
seqB
(const Sequence &seqB)
LocARNA::AlignerParams
inline
seqB_
LocARNA::AlignerParams
protected
sequ_local
(bool sequ_local)
LocARNA::AlignerParams
inline
sequ_local_
LocARNA::AlignerParams
protected
stacking
(bool stacking)
LocARNA::AlignerParams
inline
stacking_
LocARNA::AlignerParams
protected
struct_local
(bool struct_local)
LocARNA::AlignerParams
inline
struct_local_
LocARNA::AlignerParams
protected
trace_controller
(const TraceController &trace_controller)
LocARNA::AlignerParams
inline
trace_controller_
LocARNA::AlignerParams
protected
~AlignerParams
() (defined in
LocARNA::AlignerParams
)
LocARNA::AlignerParams
virtual
Generated on Mon Aug 15 2016 17:40:22 for LocARNA-1.8.11 by
1.8.11