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LocARNA-1.8.11
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This is the complete list of members for LocARNA::Aligner, including all inherited members.
| align() | LocARNA::Aligner | |
| Aligner(const Aligner &aligner) | LocARNA::Aligner | |
| Aligner(const AlignerParams &ap) | LocARNA::Aligner | |
| create() | LocARNA::Aligner | inlinestatic |
| evaluate() | LocARNA::Aligner | |
| get_alignment() const | LocARNA::Aligner | |
| get_restriction() const | LocARNA::Aligner | |
| normalized_align(score_t L, bool opt_verbose) | LocARNA::Aligner | |
| operator=(const Aligner &aligner) | LocARNA::Aligner | |
| optimize_consensus_structure() | LocARNA::Aligner | |
| penalized_align(score_t position_penalty) | LocARNA::Aligner | |
| set_alignment(const Alignment &alignment) | LocARNA::Aligner | |
| set_restriction(const AlignerRestriction &r) | LocARNA::Aligner | |
| suboptimal(int k, score_t threshold, bool opt_normalized, score_t normalized_L, size_t output_width, bool opt_verbose, bool opt_local_out, bool opt_pos_output, bool opt_write_structure) | LocARNA::Aligner | |
| trace() | LocARNA::Aligner | |
| ~Aligner() | LocARNA::Aligner |
1.8.11
