- a -
- absMoves : cpsp::gecode::GC_ThreadingSpaceMoveDist
- actElem : cpsp::gecode::GC_StlSetRangeIterator
- actFile : cpsp::HCoreDatabaseFILE
- actFileHHcontInd : cpsp::HCoreDatabaseFILE
- actFileNamePref : cpsp::HCoreDatabaseFILE
- actFrameSize : cpsp::HCore
- actHHcontacts : cpsp::HCoreDatabaseFILE
- b -
- BHDomain : cpsp::scth::SideChainThreading
- BHs : cpsp::scth::SideChainThreading
- BPs : cpsp::scth::SideChainThreading
- BreakSym : cpsp::scth::SideChainOptions
- c -
- cancelProp : cpsp::gecode::GC_LatticeNeighbored2
- conLevel : cpsp::gecode::GC_LatticeNeighbored2 , cpsp::gecode::GC_Neighbored3 , cpsp::gecode::GC_Neighbored2
- connected : cpsp::HCoreDatabasePGSQL
- contacts : cpsp::HCore
- contactsInSeq : cpsp::HPThreadingOptions , cpsp::gecode::GC_HPThreading
- coreDB : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions , cpsp::scth::SideChainOptions
- coreFrame : cpsp::HCore
- coreSelection : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions
- coreSize : cpsp::gecode::GC_HPThreading , cpsp::HCoreDatabaseFILE , cpsp::HCoreDatabasePGSQL
- cps : Gecode::Search::SymmBreaker< View, Val >
- cursorOpen : cpsp::HCoreDatabasePGSQL
- Cutoff : cpsp::scth::SideChainDegOptions
- d -
- data : cpsp::gecode::GC_StlSetRangeIterator
- DBROOTPATH : cpsp::HCoreDatabaseFILE
- DEF_DBNAME : cpsp::HCoreDatabasePGSQL
- DEF_PASSWORD : cpsp::HCoreDatabasePGSQL
- DEF_USERNAME : cpsp::HCoreDatabasePGSQL
- degree : Gecode::Int::Branch::BySizeMinDegreeMax
- Description : cpsp::scth::SideChainOptions
- distanceMin : cpsp::gecode::GC_HPThreading
- distanceMode : cpsp::gecode::GC_HPThreading
- domains : cpsp::gecode::GC_ThreadingSpace
- Draw : cpsp::scth::SideChainOptions
- e -
- errorCount : cpsp::Exception
- evenPositions : cpsp::HCore
- f -
- firstSolFound : cpsp::gecode::FirstSolBranching< View, Val, ViewSel, ValSel >
- h -
- HDomain : cpsp::scth::SideChainThreading
- Hs : cpsp::scth::SideChainThreading
- hSinglets : cpsp::HCore
- hull : cpsp::HCore
- hullLvl : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions
- i -
- index : cpsp::gecode::IdxIntView
- j -
- JmlHome : cpsp::scth::SideChainOptions
- l -
- latDescr : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions
- latFrame : cpsp::gecode::GC_ValNearCenter , cpsp::gecode::GC_HPThreading
- lattice : cpsp::gecode::GC_Neighbored3 , cpsp::gecode::GC_Neighbored2 , cpsp::HPThreadingOptions
- latticeFrame : cpsp::gecode::GC_ThreadingSymmBreaker
- Length : cpsp::scth::SideChainDegOptions
- m -
- maxCheckSize : Gecode::Int::Rel::NqSubsume< View >
- maxE : cpsp::HPThreadingOptions
- maxEqual : cpsp::gecode::GC_ThreadingSpaceMoveDist , cpsp::gecode::GC_ThreadingSpacePosDist
- maxHH : cpsp::HCoreDatabaseFILE , cpsp::HCoreDatabasePGSQL
- maxPCoreDistance : cpsp::HPThreadingOptions , cpsp::gecode::GC_HPThreading
- maxPropSize : cpsp::gecode::GC_LatticeNeighbored2 , cpsp::gecode::GC_Neighbored2 , cpsp::gecode::GC_Neighbored3
- maxPropSizeBin : cpsp::gecode::GC_LatticeNeighbored2 , cpsp::gecode::GC_Neighbored2 , cpsp::gecode::GC_Neighbored3
- MAXPROPSIZEINIT : cpsp::gecode::GC_Neighbored2 , cpsp::gecode::GC_Neighbored3 , cpsp::gecode::GC_LatticeNeighbored2
- maxSols : cpsp::HPThreadingOptions
- maxSteps : cpsp::scth::SideChainDegOptions
- maxStructures : cpsp::gecode::GC_HPThreading
- maxX : cpsp::HCore::CoreFrame
- maxY : cpsp::HCore::CoreFrame
- maxZ : cpsp::HCore::CoreFrame
- minE : cpsp::HPThreadingOptions
- minEvenOddHs : cpsp::HPThreadingOptions , cpsp::gecode::GC_HPThreading
- minHH : cpsp::HCoreDatabaseFILE , cpsp::HCoreDatabasePGSQL
- minPropSize : cpsp::gecode::GC_LatticeNeighbored2 , cpsp::gecode::GC_Neighbored3 , cpsp::gecode::GC_Neighbored2
- minX : cpsp::HCore::CoreFrame
- minY : cpsp::HCore::CoreFrame
- minZ : cpsp::HCore::CoreFrame
- myLvl : cpsp::gecode::FirstSolBranching< View, Val, ViewSel, ValSel >
- n -
- neighborhood : cpsp::gecode::GC_LatticeNeighbored2 , cpsp::gecode::GC_Neighbored2 , cpsp::gecode::GC_Neighbored3
- nextMax : cpsp::gecode::GC_StlSetRangeIterator
- nextMin : cpsp::gecode::GC_StlSetRangeIterator
- noFurtherRange : cpsp::gecode::GC_StlSetRangeIterator
- noOutput : cpsp::gecode::GC_HPThreading
- noRecomputation : cpsp::gecode::GC_HPThreading
- normalizeStructures : cpsp::HPThreadingOptions , cpsp::gecode::GC_HPThreading
- numOfHSinglets : cpsp::HCore
- numOfPSinglets : cpsp::HCore
- o -
- onlyCountingStructures : cpsp::HPThreadingOptions
- OutCoreDomain : cpsp::scth::SideChainThreading
- Output : cpsp::scth::SideChainOptions
- outString : cpsp::Exception
- p -
- points : cpsp::HCore
- Ps : cpsp::scth::SideChainThreading
- pSinglets : cpsp::HCore
- r -
- RandomizerPath : cpsp::scth::ProteinLikeOptions , cpsp::scth::SideChainDegOptions
- rank : cpsp::gecode::GC_RankViewSel< VS > , cpsp::gecode::GC_ThreadingSpace , Gecode::Int::IntRankView
- retValue : cpsp::Exception
- runMode : cpsp::gecode::GC_HPThreading
- s -
- Seed : cpsp::scth::SideChainDegOptions
- seqFeatureMap : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions
- SeqLen : cpsp::scth::ProteinLikeOptions
- sequence : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions
- Sequence : cpsp::scth::SideChainOptions
- shiftVec : cpsp::gecode::GC_ThreadingSymmBreaker
- sideChainOptions : cpsp::scth::ProteinLikeOptions , cpsp::scth::SideChainDegOptions
- size : Gecode::Int::Branch::BySizeMinDegreeMax , cpsp::HCore
- solMoves : cpsp::gecode::GC_ThreadingSpaceMoveDist
- solPositions : cpsp::gecode::GC_ThreadingSpacePosDist
- SolutionsNum : cpsp::scth::SideChainOptions
- solutionsNum : cpsp::scth::SideChainThreadingHandler
- startSeq : cpsp::scth::SideChainDegOptions
- Stat : cpsp::scth::SideChainDegOptions
- statistics : cpsp::scth::ProteinLikeOptions
- statisticsOut : cpsp::gecode::GC_HPThreading
- symmetries : Gecode::Search::SBViewValBranching< View, Val, ViewSel, ValSel, SymmBreaker >
- symOf : Gecode::Search::SymmBreaker< View, Val >
- t -
- TEMPERATURE : cpsp::scth::SideChainDegOptions
- tgtDeg : cpsp::scth::SideChainDegOptions
- Threshold : cpsp::scth::SideChainDegOptions , cpsp::scth::ProteinLikeOptions
- timeLimit : cpsp::scth::SideChainDegOptions
- u -
- useDDS : cpsp::gecode::GC_HPThreading
- useNoDDS : cpsp::HPThreadingOptions
- useSymmetryBreaking : cpsp::gecode::GC_HPThreading , cpsp::HPThreadingOptions
- v -
- verbose : cpsp::scth::SideChainOptions
- verboseOut : cpsp::scth::SideChainDegOptions
- verboseOutput : cpsp::HPThreadingOptions , cpsp::gecode::GC_HPThreading
- ViewerHome : cpsp::scth::SideChainOptions
- vs : cpsp::gecode::GC_RankViewSel< VS >
- w -
- withOutput : cpsp::scth::SideChainOptions