cpsp::scth::SideChainThreadingHandler Class Reference

#include <chain_threading_all.h>

Detailed Description

This class is for side chain handler, it applies the constraint threading for the most optimal Core till the less until a solution is found.

Definition at line 47 of file chain_threading_all.h.


Public Member Functions
int	getSolutionsNum ()
	SideChainThreadingHandler (const SideChainOptions &)
Private Member Functions
int	calculateCoreSize (std::string *seq)
pair< int, int >	checkHCoreParity (const HCore *hCore)
pair< int, int >	checkParity (const std::string *seq)
bool	checkSequenceHCoreParity (const std::string seq, const HCore hCore)
Private Attributes
int	solutionsNum

cpsp::scth::SideChainThreadingHandler::SideChainThreadingHandler ( const SideChainOptions & option )

The constructor gets the Side chain options as the only input.

Definition at line 90 of file chain_threading_all.cpp.

int cpsp::scth::SideChainThreadingHandler::calculateCoreSize ( std::string * seq ) [private]

A simple function returns the number of Hs in the sequence

Parameters:

seq

The sequence string

Definition at line 37 of file chain_threading_all.cpp.

pair< int, int > cpsp::scth::SideChainThreadingHandler::checkHCoreParity ( const HCore * hCore ) [private]

This function returns as a pair the number of odd and even points of the HCore

Returns:: pair representing the number of odd (first) and even (second) points of the HCore

Definition at line 61 of file chain_threading_all.cpp.

pair< int, int > cpsp::scth::SideChainThreadingHandler::checkParity ( const std::string * seq ) [private]

This function returns as a pair the number of odd and even Hs in the sequence

Returns:: pair representing the number of odd (first) and even (second) number of Hs

Definition at line 48 of file chain_threading_all.cpp.

bool cpsp::scth::SideChainThreadingHandler::checkSequenceHCoreParity	(	const std::string *	seq,
		const HCore *	hCore
	)			`[private]`

In the case of Cubic lattice only (not the FCC), this function will apply the parity check of the sequence against the Core

Returns:: true if the parity check of the sequence against the hCore holds otherwise false

Definition at line 77 of file chain_threading_all.cpp.

int cpsp::scth::SideChainThreadingHandler::getSolutionsNum ( )

Definition at line 197 of file chain_threading_all.cpp.

number of found solutions

Definition at line 71 of file chain_threading_all.h.

The documentation for this class was generated from the following files: