LocARNA::Ribofit_will2014 Class Reference

Inheritance diagram for LocARNA::Ribofit_will2014:

List of all members.

Public Member Functions
	Ribofit_will2014 ()
	Construct.
	~Ribofit_will2014 ()
	destructor
Protected Member Functions
double	basematch_score (char i, char j, double identity) const
	ribofit base match score for specific identity
double	arcmatch_score (char i, char j, char k, char l, double identity) const
	ribofit arc match score for specific identity

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Member Function Documentation

double LocARNA::Ribofit_will2014::arcmatch_score	(	char	i,
		char	j,
		char	k,
		char	l,
		double	identity
	)		const [inline, protected, virtual]

ribofit arc match score for specific identity

Parameters:

i	left character of first arc
j	right character of first arc
k	left character of second arc
l	right character of second arc
identity	sequence identity

Returns:

ribofit arc match score

Implements LocARNA::Ribofit.

double LocARNA::Ribofit_will2014::basematch_score	(	char	i,
		char	j,
		double	identity
	)		const [inline, protected, virtual]

ribofit base match score for specific identity

Parameters:

i	character in sequence A
j	character in sequence B
identity	sequence identity

Returns:

ribofit base match score

Implements LocARNA::Ribofit.

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The documentation for this class was generated from the following files:

• src/LocARNA/ribofit.hh