LocARNA::MultipleAlignment::AliColumn Class Reference

read only proxy class representing a column of the alignment More...

#include <multiple_alignment.hh>

List of all members.

Public Member Functions
	AliColumn (const MultipleAlignment &ma, size_type col_index)
	Construct from multiple alignment column.
const char &	operator[] (size_type row_index) const
	element access
size_type	size () const
	Size / Number of rows.
bool	operator== (const AliColumn &ac) const
	Test equality.
bool	operator!= (const AliColumn &ac) const
	Test inequality.

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Detailed Description

read only proxy class representing a column of the alignment

Allow read only access to the symbols in the column by their row index

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Constructor & Destructor Documentation

LocARNA::MultipleAlignment::AliColumn::AliColumn	(	const MultipleAlignment &	ma,
		size_type	col_index
	)		[inline]

Construct from multiple alignment column.

Parameters:

ma	multiple alignment
col_index	column index

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Member Function Documentation

bool LocARNA::MultipleAlignment::AliColumn::operator!=

(

const AliColumn &

ac

)

const [inline]

Test inequality.

Parameters:

ac	second alignment column

Returns:

whether columns are equal

bool LocARNA::MultipleAlignment::AliColumn::operator==

(

const AliColumn &

ac

)

const [inline]

Test equality.

Parameters:

ac	second alignment column

Returns:

whether columns are equal

const char& LocARNA::MultipleAlignment::AliColumn::operator[]

(

size_type

row_index

)

const [inline]

element access

Parameters:

row_index

0-based index of alignment row

Returns:

character at row in the represented column

size_type LocARNA::MultipleAlignment::AliColumn::size

(

)

const [inline]

Size / Number of rows.

Returns:

number of rows of the multiple alignment

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The documentation for this class was generated from the following file:

• src/LocARNA/multiple_alignment.hh