"enum class" of gaps in alignment edges More...

#include <aux.hh>

Public Member Functions
	Gap (size_t idx)
	init from 0-based index
size_t	idx () const
	0-based index
bool	operator== (const Gap &x) const
	equality
bool	operator!= (const Gap &x) const
	inequality
Static Public Attributes
static size_t	size = 0
	< index of enumeration value
static const Gap	regular = Gap(Gap::size++)
	regular gap
static const Gap	loop = Gap(Gap::size++)
	gap from inserting/deleting a loop (in sparse)
static const Gap	locality = Gap(Gap::size++)
static const Gap	other = Gap(Gap::size++)
	other gaps

Detailed Description

"enum class" of gaps in alignment edges

Constructor & Destructor Documentation

LocARNA::Gap::Gap ( size_t idx ) [inline, explicit]

init from 0-based index

Parameters:

idx index

bool LocARNA::Gap::operator!= ( const Gap & x ) const [inline]

inequality

Parameters:

x operand

bool LocARNA::Gap::operator== ( const Gap & x ) const [inline]

equality

Parameters:

x operand

gap outside of the locally aligned region (sequence and structure local alignment)

size_t LocARNA::Gap::size = 0 [static]

< index of enumeration value

enum size

The documentation for this class was generated from the following files: