src/ell/rna/RNAFreeEnergy_TB.cc File Reference

#include <biu/assertbiu.hh>
#include "ell/rna/RNAFreeEnergy_TB.hh"
#include <ViennaRNA/fold_vars.h>
#include <ViennaRNA/pair_mat.h>
#include <cstring>
#include <limits.h>

Include dependency graph for RNAFreeEnergy_TB.cc:

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Namespaces

namespace ell

Functions

void dummyCall ()

int encode_char (char c)

float energy_of_struct (const char *string, const char *structure)

int loop_energy (short *ptable, short *s, short *s1, int i)

short * make_pair_table (const char *structure)

void update_fold_params ()

Variables

bool ell::ViennaFoldParamsSet = false

Function Documentation

void dummyCall ( )

Definition at line 16 of file RNAFreeEnergy_TB.cc.

int encode_char ( char c )

float energy_of_struct	(	const char *	string,
		const char *	structure
	)

int loop_energy	(	short *	ptable,
		short *	s,
		short *	s1,
		int	i
	)

short* make_pair_table ( const char * structure )

void update_fold_params ( )


Namespaces
namespace	ell
Functions
void	dummyCall ()
int	encode_char (char c)
float	energy_of_struct (const char string, const char structure)
int	loop_energy (short ptable, short s, short *s1, int i)
short *	make_pair_table (const char *structure)
void	update_fold_params ()
Variables
bool	ell::ViennaFoldParamsSet = false