Bioinformatics
Institute of Computer Science
University Freiburg
de

GraphProt - modeling binding preferences of RNA-binding proteins

Synopsis

GraphProt can be used for modeling binding preferences of RNA-binding proteins from high-throughput experiments such as CLIP-seq and RNAcompete.

Publication

Downloads

Sequences used to train CLIP-seq models: GraphProt_CLIP_sequences.tar.bz2
Sequences used to generate CLIP-seq motifs: GraphProt_CLIP_motifseqs.tar.bz2
Parameters used in GraphProt publication: parameters.tar.bz2
GraphProt CLIP models: GraphProt_models_CLIP.tar.bz2
GraphProt RNAcompete models: GraphProt_models_RNAcompete (FTP)
Sequences used for PTB affinity predictions and Ago2 3'-UTR evaluations: GraphProt_PTB_UTRs.tar.bz2

Installation and Usage

Instructions on installation and usage can be found with file "README.html" included with GraphProt.

Problems/Questions?

For any questions or issues concerning GraphProt please write an email to: email as png