cpsp::scth::RunSideChainThreading Class Reference

#include <chain_threading_all.h>

Detailed Description

This class to handle running the side chain threading.

Definition at line 79 of file chain_threading_all.h.


Static Public Member Functions
static void	deleteBrackets (std::string &absMoves)
static void	drawElement (const std::string seq, std::string solution, const std::string jmlHome, const std::string viewerHome, const std::string Description)
template<template< class > class Engine>
static int	run (const std::string sequence, const biu::LatticeFrame latFrame, const biu::IndexVec neighVecs, cpsp::HCore hCore, const cpsp::scth::SideChainOptions &option, const int maxSol)

static void cpsp::scth::RunSideChainThreading::deleteBrackets ( std::string & absMoves ) [inline, static]

Just to delete brackets.

Definition at line 86 of file chain_threading_all.h.

static void cpsp::scth::RunSideChainThreading::drawElement	(	const std::string *	seq,
		std::string	solution,
		const std::string *	jmlHome,
		const std::string *	viewerHome,
		const std::string *	Description
	)			`[inline, static]`

Draw one solution

Parameters:

	seq	The sequence string
	solution	The solution as set of moves
	jmlHome	The path of the jmlHome
	viewerHome	The path of the side chain viewer binary
	Description	The lattice description as CUB (Cubic) or FCC

Definition at line 102 of file chain_threading_all.h.

template<template< class > class Engine>

static int cpsp::scth::RunSideChainThreading::run	(	const std::string *	sequence,
		const biu::LatticeFrame *	latFrame,
		const biu::IndexVec *	neighVecs,
		cpsp::HCore *	hCore,
		const cpsp::scth::SideChainOptions &	option,
		const int	maxSol
	)			`[inline, static]`

Run the side chain threading

Parameters:

	sequence	The string sequence
	latFram	The lattice frame
	neighVecs	The neighbor vectors (for effeciency, though it is redundant)
	hCore	The HCore
	option	The side chains options

Definition at line 130 of file chain_threading_all.h.

The documentation for this class was generated from the following file: