LocARNA::RnaEnsembleImpl Member List

This is the complete list of members for LocARNA::RnaEnsembleImpl, including all inherited members.

arc_2_prob_ali(size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
arc_2_prob_noali(size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
arc_in_loop_prob_ali(size_type ip, size_type jp, size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
arc_in_loop_prob_noali(size_type ip, size_type jp, size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
compute_ensemble_probs(const PFoldParams &params, bool inLoopProbs, bool use_alifold)	LocARNA::RnaEnsembleImpl
compute_McCaskill_alifold_matrices(const PFoldParams &params, bool inLoopProbs)	LocARNA::RnaEnsembleImpl
compute_McCaskill_matrices(const PFoldParams &params, bool inLoopProbs)	LocARNA::RnaEnsembleImpl
compute_Qm2()	LocARNA::RnaEnsembleImpl
compute_Qm2_ali()	LocARNA::RnaEnsembleImpl
expMLbase_	LocARNA::RnaEnsembleImpl
in_loop_probs_available_	LocARNA::RnaEnsembleImpl
McCmat_	LocARNA::RnaEnsembleImpl
min_free_energy_	LocARNA::RnaEnsembleImpl
min_free_energy_structure_	LocARNA::RnaEnsembleImpl
pair_probs_available_	LocARNA::RnaEnsembleImpl
ptype_of_admissible_basepair(size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
qm2_	LocARNA::RnaEnsembleImpl
RnaEnsembleImpl(const MultipleAlignment &sequence, const PFoldParams &pfparams, bool inLoopProbs, bool use_alifold)	LocARNA::RnaEnsembleImpl
sequence_	LocARNA::RnaEnsembleImpl
stacking_probs_available_	LocARNA::RnaEnsembleImpl
unpaired_in_loop_prob_ali(size_type k, size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
unpaired_in_loop_prob_noali(size_type k, size_type i, size_type j) const	LocARNA::RnaEnsembleImpl
used_alifold_	LocARNA::RnaEnsembleImpl
~RnaEnsembleImpl()	LocARNA::RnaEnsembleImpl