LocARNA::RnaEnsemble Member List

This is the complete list of members for LocARNA::RnaEnsemble, including all inherited members.

arc_2_prob(size_type i, size_type j) const	LocARNA::RnaEnsemble
arc_external_prob(size_type i, size_type j) const	LocARNA::RnaEnsemble
arc_in_loop_prob(size_type ip, size_type jp, size_type i, size_type j) const	LocARNA::RnaEnsemble
arc_prob(size_type i, size_type j) const	LocARNA::RnaEnsemble
arc_stack_prob(size_type i, size_type j) const	LocARNA::RnaEnsemble
has_base_pair_probs() const	LocARNA::RnaEnsemble
has_in_loop_probs() const	LocARNA::RnaEnsemble
has_stacking_probs() const	LocARNA::RnaEnsemble
length() const	LocARNA::RnaEnsemble
min_free_energy() const	LocARNA::RnaEnsemble
min_free_energy_structure() const	LocARNA::RnaEnsemble
multiple_alignment() const	LocARNA::RnaEnsemble
operator=(const RnaEnsemble &rna_ensemble)	LocARNA::RnaEnsemble
paired_downstream_prob(size_type i) const	LocARNA::RnaEnsemble
paired_upstream_prob(size_type i) const	LocARNA::RnaEnsemble
RnaEnsemble(const MultipleAlignment &ma, const PFoldParams &params, bool inLoopProbs, bool use_alifold=true)	LocARNA::RnaEnsemble
RnaEnsemble(const RnaEnsemble &rna_ensemble)	LocARNA::RnaEnsemble
unpaired_external_prob(size_type k) const	LocARNA::RnaEnsemble
unpaired_in_loop_prob(size_type k, size_type i, size_type j) const	LocARNA::RnaEnsemble
unpaired_prob(size_type i) const	LocARNA::RnaEnsemble
~RnaEnsemble()	LocARNA::RnaEnsemble	[virtual]