LocARNA::AlignmentImpl Member List

This is the complete list of members for LocARNA::AlignmentImpl, including all inherited members.

a_	LocARNA::AlignmentImpl
AlignmentImpl(Alignment *self, const Sequence &seqA, const Sequence &seqB)	LocARNA::AlignmentImpl	[inline]
b_	LocARNA::AlignmentImpl
dot_bracket_structure(const std::string &str, const Alignment::edge_ends_t &x)	LocARNA::AlignmentImpl	[static]
self_	LocARNA::AlignmentImpl
seqA_	LocARNA::AlignmentImpl
seqB_	LocARNA::AlignmentImpl
strA_	LocARNA::AlignmentImpl
strB_	LocARNA::AlignmentImpl
write_debug(std::ostream &out) const	LocARNA::AlignmentImpl
write_debug(std::ostream &out, const Alignment::edge_ends_t &ends)	LocARNA::AlignmentImpl	[static]