LocARNA::Alignment Member List

This is the complete list of members for LocARNA::Alignment, including all inherited members.

add_basepairA(int i, int j)	LocARNA::Alignment
add_basepairB(int i, int j)	LocARNA::Alignment
add_deleted_basepairA(int i, int j)	LocARNA::Alignment
add_deleted_basepairB(int i, int j)	LocARNA::Alignment
Alignment(const Sequence &seqA, const Sequence &seqB)	LocARNA::Alignment
Alignment(const Sequence &seqA, const Sequence &seqB, const edges_t &edges)	LocARNA::Alignment
Alignment(const Alignment &alignment)	LocARNA::Alignment
alignment_edges(bool only_local) const	LocARNA::Alignment
alistr_to_edge_ends(const std::string &alistr)	LocARNA::Alignment	[static]
append(edge_end_t i, edge_end_t j)	LocARNA::Alignment
clear()	LocARNA::Alignment
dot_bracket_structureA(bool only_local) const	LocARNA::Alignment
dot_bracket_structureB(bool only_local) const	LocARNA::Alignment
edge_end_t typedef	LocARNA::Alignment
edge_ends_t typedef	LocARNA::Alignment
edges_t typedef	LocARNA::Alignment
local_endA() const	LocARNA::Alignment
local_endB() const	LocARNA::Alignment
local_startA() const	LocARNA::Alignment
local_startB() const	LocARNA::Alignment
operator=(const Alignment &alignment)	LocARNA::Alignment
seqA() const	LocARNA::Alignment
seqB() const	LocARNA::Alignment
set_consensus_structure(const RnaStructure &structure)	LocARNA::Alignment
set_structures(const RnaStructure &structureA, const RnaStructure &structureB)	LocARNA::Alignment
swap(Alignment &a1, Alignment &a2)	LocARNA::Alignment
~Alignment()	LocARNA::Alignment