CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroAna_CAF1_left   AGCGGACTCTGAAATGG-GAAAGAGTATAGAGTTATATTGGTCCT--TTTTATGAGGAGATAGTTGGTAAGCTTAAGAAATCAGCGAGAAGATTAGAATCTGGTCATGCGTGCGCCAACT
DroEre_CAF1_left   AGCGAACCCTGAAACAGTTAATTGGCTAATGATAAGGACGAACTA--TAGTAAGTATTAAAGGTCGG-ATGGGAATGCCATCAGCGAGAAGATTAGTTACTGGTCATGCGTGCGCCAACT
DroMel_CAF1_left   ATCGAACCCTGAAACATTTAAATGGGTAATAATTAGAACGAATTA--TAGTAAGTATTTAGGGGCGG-ATGGGAATGCCGTCAGCGAGAAGATTAGTTGCTGGTCATGCGTGCGCCAACT
DroPer_CAF1_left   GAATCCTACAAGAGAGGGGTAAGCGGAGTTGAATATGAAGTTTCA--TGGTGGGGCCTCGTCAGGAG-CTATCTGATCCATCAGCGAGAAGATTAGTTATTGGTCATGCGTGCGCCAACT
DroPse_CAF1_left   GAATCCTACAAGAGAGGGGTAAGCGGAGTTGAATATGACGTTTCA--TGGTGGGGCCTCTTCAGGGG-CTATCTGATCCATCAGCGAGAAGATTAGTTATTGGTCATGCGTGCGCCAACT
DroSim_CAF1_left   AGCGAACCCTGAAACAATTTAATGGGTAATAATTAGGAAGAACTA--TAGTAAGTATTTAGGGGCAG-ATGGGAATGCCGTCAGCGAGAAGATTAGTTGCTGGTCATGCGTGAGCCAACT
DroYak_CAF1_left   AGCGAACCCTGAAATAGTGAATGGGGAAATTGTTAGGACGAACTA--TCGGAAGTATTTAAGGTCAA-ATGGGAATGCCATCAGCGAGAAGATTAGTTGCTGGTCATGCGTGCGCCAACT
DroMoj_CAF1_left   GCGGGAGGTAAGAAGAGAATGTTGTTATAGTATATGCATTCACCAGAGTCTCAATTACAATAGCCTAAT---GAGAGCCATCAGAGAGAAGATTAGTCAATGGTCATGCGTGCGCCAATT
DroVir_CAF1_left   CCCTACGGCG-AAAGAAAGTGTATCTAGAGTAGCTGGATTTAA--TAGACACAGCCTACGCAGCGGGGCAGCAGCTGCCATCAGAGAGAAGATTAGTCTATGGTCATGCGTGCGCCAATT

DroAna_CAF1_left   GTTGCCAGCTGCCCACTCCCTGA--AGTAAGGTTTCATCATTTTGGG---CGATCCTAAAG-A---GAGTTA--TAGGGATTA-TAAGAT--TTTACTCACTTGTAGCACCGATCTATGT
DroEre_CAF1_left   GTTGCCAGCTGCCCACTCTCTGCA-TTAATAGTTTTATCATCATAAG---CTCCT--ATAC-A---TTTA----CTGGGATTG-GAATGT--TTTACTCACTTGTAACAACGATCGATGC
DroMel_CAF1_left   GTTGCCAGCTGCCCACTCCCTGCA-TTTGTGGTTTAATCATCATTGG---CTCCT--GTGC-A---TCTAAG--GCGGGATTC-GTATGG--TTTACTCACTTGTAACACCGATCGATGC
DroPer_CAF1_left   GTTGCCAGATGCGCACTCCCTTTC-ACTTTGGGTTTAACATCATGTGGGACTCAA--CTAC-A---GGAATTCAGCAACAGGG-GTTCGCTTTTTACTTACTTGTAGCTGCGATCGATGG
DroPse_CAF1_left   GTTGCCAGATGCGCACTCCCTTTC-ACTTTGGGTTTAACATCATGTGGGACTCAA--CTAC-A---GGAATTCAGCAACAGGG-GTTCGCTTTTTACTTACTTGTAGCTGCGATCGATGG
DroSim_CAF1_left   GTTGCCAGCTGCCCACTCCCTCCA-TTTGTGGTTTTATCATCATTGG---CTCCT--GTGC-A---TCTAAG--GGGGGATTC-GTATGG--TTTACTCACTTGTAACACCGATCGATGC
DroYak_CAF1_left   GTTGCCAGCTGCCCACTCCCTACA-TTCATAGTTTTATCATCATTGG---CTCCT--GTAC-A---TTTATT--GT--ACTTG-GCATGT--TCTACTCACTTGTAACAACGATCGATGC
DroMoj_CAF1_left   GTTGCCAATTGCGCAATCCCAAAC-TGAAGTTG-ATTTCATCATCGG---CTCAA--GATTCAGTTGCTACA--GATGCTATA-GCCCGC--TTCACTTACTTATAGCAGCGATCCACAT
DroVir_CAF1_left   GTTGCCAATTGCGCAATCCCATTGAAGATTTGGTTTGTCATCAGCTGGAGCGGAT--GTCTGTTGTACCGCC--GGAAGCGCTTAGCTCT--TCCACTTACTTGTAACATCGATCCACAT

DroAna_CAF1_left   TGTTTACGAAGATGATGGTCTTGCCCCGAACCAGGCGCAGTTTCAGCAACGCGTACAGTATGGCCGGCTTGTCG
DroEre_CAF1_left   TGTTCACAAAGATGATGCTCTTGCCGCGTATAAGCCGCAGCTTTAATAAGGCGTACAATATAGCAGGCTTGTCG
DroMel_CAF1_left   TGTTCACAAAGATTATGCTCTTGCCGCGTATGAGTCTCAGCTTCAATAAGGCGTACAAGATAGCCGGTTTATCG
DroPer_CAF1_left   TGTTGACAAATATAATGGTCTTGCCGCGTATCAGTTGCAACTTAAGCAAGGCGTACAGGATGACCGGCTTGTCG
DroPse_CAF1_left   TGTTGACAAATATAATGGTCTTGCCGCGTATCAGTTGCAGCTTAAGCAAGGCGTACAGGATGACCGGCTTGTCG
DroSim_CAF1_left   TGTTTACAAAGATTATGCTCTTGCCGCGTATGAGTCTCAGCTTTAATAGGGCGTACAATATAGCCGGTTTGTCG
DroYak_CAF1_left   TGTTCACAAAGATGATGCTCTTGCCGCGTATAAGCCTCAGCTTTAATAAGGCGTACAATATAGACGGCTTGTCG
DroMoj_CAF1_left   TGTTCACAAAGATGATGCTCTTGCCCTGGATGAGCATTAGCTTCAGCAGAGCATACAATATGGCTGGCTTCTCG
DroVir_CAF1_left   TGTTGACGAATATGATGCTCTTGCCCTGGATGAGCGTTAGCTTGAGCAGGGCGCATAATATGGCCGGCTTGTCG