CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   TTTAGCACCAACCATTGA-ATTTAGCTGCGAGCTGTACAAAAAAGACAACTGAAGAGTTTGAAA--TAAAAAAAAGGACTCTCGACGACCGTGACAGGACTCGAACCTGCAATCTTCGGA
DroSec_CAF1_left   ACCAAAAATATATATATACACACTGAATTTAGCTGTAATGTCAACCAAAAAGTTTGGAAAATAT--AA-CAAAAACGGATTCTTACGACCGTGACAGGATTCGAACCTGCAATCTTCGGA
DroYak_CAF1_left   AATGTCTTTGTACAATGTCAATGTACAAACAGA-CAACAAAAAAGTTTGGAGCATAGGATAGAT--ATCAAAAAAGGGTTTTCGACGACCGTGACAGGACTCGAACCTGCAATCTTCGGA
DroMel_CAF1_left   TATACATACACACCGCATTTAGCTGTAAAC---TGTTCAAAAATGAAAGCCAAAAAGTTTGGAAGATAACAAAAAGGGATTTGTACGACCGTGACAGGATTCGAACCTGCAATCTTCGGA

DroEre_CAF1_left   TCCGAAGTCCGACGCCTTATCCATTAGGCCACACGGTCAGTTGTTTCAACGTGGCTTAAGTTGCCAACAAAAGCAACCAGCTAAGTACGGACGCCAGCTTAAAAGGATAAGAAAGGAAG-
DroSec_CAF1_left   TCCGAAGTCCGACGCCTTATCCATTAGGCCACACGGTCAGTTGTTCAAACGTGGCTTAAGTTGCCAAGAAAAGCAACCAGCTGAGTAGGGACTCGAGCATAAAAGGATACAAAAGGAAA-
DroYak_CAF1_left   TCCGAAGTCCGACGCCTTATCCATTAGGCCACACGGTCAGTTGTTTCAACGTGGCTTAAGTTACCAACAAAAGCTACTATCTAAGTAGGGAGTCAAGCTTAAAAGGATTCGCAAGGAAG-
DroMel_CAF1_left   TCCGAAGTCCGACGCCTTATCCATTAGGCCACACGGTCAGTTGTTTAAACGTGGCTTAAGTTGCCAAGAAAAGCAACTAGCTGAGCAGGGACTCGAGCATAAAAGGATACAAAAGGAAAA

DroEre_CAF1_left   AAGGTCATAACCGCATATAAGACACCCCAATCAAATGGCAACTGTATTGCCAACAGTTTTACAATAAATAGCGACACG-CTATTA
DroSec_CAF1_left   GAAGTCACAACCGCATATAAGACACCCCAATCAAATGGCAACTATATTGCCAATAGTTTAACAGTTAATAGTGCCTCG-CTAATA
DroYak_CAF1_left   AAGGTCATAACCGCATATAAGACACTCCAATCAAATGGCAACTGCATTGCCAATATCTTTACAATAAATAGTGTCACG-CTGTTA
DroMel_CAF1_left   GAAGTCATTACCGCACATAAGACACCCCAATCAAATGGCAGCTATATGGTCAATAGTTTAACATTAGT--GCGTCGCTAATAGAA