CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AATTTCACTTACTATACACTTTATGTTTTCACCATGACATATAT-TTAAACAGCATAAGAT--ATCTTCTAAA-TATTATACTTTCCGATCTTGC-ATTATTTTCGGAAA-TTCCAAAAA
DroMel_CAF1_left   ATT------TGCCACACACTTCACTCTTTTACTACGAAATATTTTTTAAGCATTATAAGAG--AGCAGCTTCT-TAATACTTTTTCTGATCTTCTGTCGATCTATTTTCTGGACTTCCAA
DroYak_CAF1_left   TTT---ATTTGCGATACATATTACTATTCCACCATAAAATATAT-TTAAGCATTATAAGAGAGAGCTCTAGCTTCTGAATAATTTCTAATCTTGC-TATATTTTTGGAA--TTCCAAAAA

DroEre_CAF1_left   AAAACAAGTTTCTA-TCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACGACTGCTTAATGATCACCGATCGCCAAG
DroMel_CAF1_left   AAAACAGATTACTATTCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACGACTGCTTAATGATCGCGGATCGTCAAG
DroYak_CAF1_left   AAAACTCATTTGCA-TCGCAGTCGGTAGGATTCGAACCTACGCTCCCAGAGGGAATCTGATTTCTAGTCAGACGCCTTAACCGCTCGGCCACGACTGCTTAGTGATCACTGATCGCCAAG

DroEre_CAF1_left   TTGGCGTGAAAACACGATTGAATAGTTTTTGGGGATTG-GGGGCTCTATTTCAAGGCATAGGCATAAAAAGCTGAGTAAGCAATGTG
DroMel_CAF1_left   TTGGCATGAAAAGAAGATTGGATCGCTTTTGAGGATCG-GGGCGTCTATTGTAAGATATAGGCATAAAAAGCTGAGTAAGCAATGAG
DroYak_CAF1_left   TTAGCGTGAAAACAAGATTGGATCGTTTTTGGGGGGTTGGGGCCACTATTTCAAGGTATAGGCATAAAAAGCTGAGTAAGCAATG-T