CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   TTATGAAAAAAGAATG--TAAATACAATTTTCAATCAATCGTTTTAAGCAAGGTTCATTTGCAATATTATAAACTAT-AATAGACCGTTTTGTATCATTGATCTTGGGAATTTGGGACGC
DroSim_CAF1_left   ATTATGTAAAAGAATG--TAAATATAATTTTCAATAAATCGTTTTATGCAAGGTTCATCTGCAATATGACAAACTAC-GATAGATCGTATTGTTTCATTGATATTGGGAATTTGGGACGC
DroYak_CAF1_left   TAATGATTAAATAAGTATGTTAATGTAAAGCGAGGCTTATCTGCAATATGAGAAACTATCATCAATGAT-AGTCAGCTTACTTACATGGGCG--TTACATATGTTCGGAATTTCGGACGT

DroMel_CAF1_left   CGGTTGCGTAACTGACCGTGTGGCCCAATGGATAAGGCGTCGGACTTCGGATCCGAAGATTGCAGGTTCGAGTCCTGTCACGGTCGAAGCT-CAGGCTACAT---TTTTTTTAAATTATA
DroSim_CAF1_left   CGGTTGCGCAACTGACCGTGTGGCCCAATGGATAAGGCGTCGGACTTCGGATCCGAAGATTGCAGGTTCGAGTCCTGTCACGGTCGTAGCT-CAGGTTATTACGACTTTTTTAACTTATT
DroYak_CAF1_left   CGATTGCGTAACTGACCGTGTGGCCTAATGGATAAGGCGTCGGACTTCGGATCCGAAGATTGCAGGTTCGAGTCCTGTCACGGTCGTAATGTCAAGTTTTTATTTTTCGTAATCCCCATT

DroMel_CAF1_left   TTTTGTTCGTCCTAGAATATATTAA---------TATGGGAGATTCCCTAGCCCAACCCATTTGTGTAACCTGAGAAATTGGGAATTTGGGACGG
DroSim_CAF1_left   TTTCGTTCGTCCTATAATATATTAA---------TATGGGAGATTCCATAGCCCCACTCATTTGTGTAACA--------TGA--GTGC----GGT
DroYak_CAF1_left   TAATAATTG--------TAGCCCAGTCTTTTTGTAACCTGAGTGGAGTAAGC----------GGGAATAGC-AACCAATTGGCAAACC----CAA