CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AT----ATTGTTTTTAATTAA-------CTCTTCAACTAACCCAAAGATCAAGCAACGATTTCGTAATCCAAGGGATTA--ATCAAGGAATTAAGGCGTCAGGAGTCAAATTTCTACATG
DroMel_CAF1_left   TT----AGTTATTAGATCTAGTTGTTAGCTCTTCAACTAATTCAAAGATAAACCAA---------GGATTTAGCAATCCTTAACAAAGAATTAAGGCGTCAGGAGTCAAATTTCTACATG
DroYak_CAF1_left   TCG---TTTGGCATTGGTTTG-------CTAGCTATTGTTGTCAACTAACGT-CAACTAAGCCAAATATCAAGTAAGAT--TTCAAGGAATTACGGCGTCAGGAGTCAAATTTCTACATG
DroSec_CAF1_left   CT----TAAAATGTAAACTTT-------ATCTTTGGTTTAGCTGCTCTTTAACTAATCCAAAGATTAAGCAATCCTCTT--ATCAAAGAACTAAGGCGTCAGGAGTCAAATTTCTACATG
DroSim_CAF1_left   AATTCTTAAAATGTAAACTTT-------ATCTTTGGTTTAGC----CTTTAACTAATCCAAAGATTAAGCAATCCTCTT--ATCAAAGAACTAAGGCGTCAGGAGTCAAATTTCTACATG

DroEre_CAF1_left   GCAGCGACCCACTCCT-ACT-GAGCAGAATTGACCTGCTAGCAG---AATGCGGGAAGCCTTGAGTTGAAGAAATTTTTTCATCATCGCAACGAGATTGAGAAGCACACGTACTTGAAAT
DroMel_CAF1_left   GCAGCAACCCACTCCG-CCG-GAGCAGGAT-AACCTGCTAGCCGCCGGAAGCGAGAAGCCTTGAGTTGAAGAAATTTTTTCATCATCGCAACGTGATTGAGAACCATGTATATTTGCAAA
DroYak_CAF1_left   GCAGCGACCCACTACACCTGGGAGCAGGATTTACCTGCTAGCCG---GGAGCGAGATGCCTTGAGTTGAAGAAATTTTTTCATCATCGCAACGAGATTGAGAACCATATGTACTTGCAAT
DroSec_CAF1_left   GAAGCGACCGACTTCG-CCG-GAGCAGGAT-GACCTGTCAGCCGCCAGAAGCGAGAAGCCTTGAGTTGAAGAAATTGTTTCATCATCGCAAAGTGATTGGGAACCATGGGTAATTGCAAG
DroSim_CAF1_left   GCAGCGACCCACTCCG-CCG-GAGCAGGAT-GACCTGTCAGCCGCCGGAAGCGAGAAGCCTTGAGTTGAAGAAATTGTTTCATCATCGCAACGTGATTGAGAACCATGGGTAATTGCAAG

DroEre_CAF1_left   T-CTTTAAGGCAAAATTATATGGAGGATGTGCGAGCGCGTTTATAGCTGA--CACTAAAAGAACTAAACAACTCACCTCAAGG
DroMel_CAF1_left   T-TTGCAAATATTTGGATGATGTGCA-AGCTT-TGAGCTGCGACAATTGAGTCAAACTAACCTCCAGAGGATCAACATCGTGG
DroYak_CAF1_left   TCTTGCAAGAGTAAAGTAAAGACACTCACCTCAAGAGGATCAACATCGTG--GGCAATGACCACCAGTTGAGCCTTC-TTCTG
DroSec_CAF1_left   T-TGGCGAGGCACGAGTGGATGTGCA-AGCTT-TCAGAACTAAACTCACCTCCAGAGGATCAACATCGTGGGCAATGACCACC
DroSim_CAF1_left   T-TGGCAAGGCACGAGTGGATGTGCA-AGCTT-TCAGAACTAAACTCACCTCCAGAGGATCAACATCGTGGGCAATGACCACC