CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   A--ATCAAAATTCCA------GCTATGTTTGGAATTAAACAGATTCAGCATATTTATTTTGAAAAAGCGCTGCTGGCAGCTAAAAATAGCTCTAGAAACCAATAAAGAAGAAATTGATAA
DroSec_CAF1_left   TTAATCAAAATTCCA------GATATGTTAGGAATTAAACAGATTCAGCATATTTATTTTGAACAAGCGCTGCTGGCAGTA-AAAATAGCTCTAGAAACCGTA-AAGAAGAAATTGATAA
DroYak_CAF1_left   TTGATCAAAATTCCA------GCTAAATCTAGATTA-TACATATTCAGCATTTTTATTTTACACAACCGCTGCTGGCAGCTAAAAATAGCTCTAGAAAACGTG-AAGAAGAAATTGATAA
DroAna_CAF1_left   A--AATAAA-TTTCTTATTCAGCAGTTTCTAGAATAGTCTATTTTTAGAACAGT----------------ATCAGTAAGCTCAAAATAAATATGGAAAATAAT-CGCATGTGGTTTAAGG

DroMel_CAF1_left   GCAACATTCTGCTCGCCGTTTGACGTGTTGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTAACGATATGTTTTCTTTTT
DroSec_CAF1_left   GCACCATTCTGCTCGTTAATTGGCGTGTTGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTAACCATGTGTTTTTTCGCC
DroYak_CAF1_left   GAATTTTTCTGCTCTGTGGTCGTTATGTGGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTTG--AGGAGATTTTTTTTG
DroAna_CAF1_left   GGGAAGAAAAATTC-GTGGCTGACAAGAGGGTTCCATGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTGGAACCTTA--AAGTCTACTTCTTTT

DroMel_CAF1_left   TGTTAAAAAATATATTTTTTCGAGAAAGTTTCTTTGCCATCTGGT----------------TAGGT---TTGGCCTAACTA-TTTCGGTTCGCATTGCCAAGCAGATAATGTGAGCAAAC
DroSec_CAF1_left   -ATCTGGTTAGGTTT-GTTAGGTCTAACTATCT----------------------------------------------------CGGTTCGCATTGCCAAGCAGATAATGTGGGCAAAC
DroYak_CAF1_left   ----TTGATAAATATATTTTCTAGAAAGTTTCTTTGCCATCTGGG----------------T---------TGCTTAACTA-TTTCTGTGCGCATTGCAAAGTGCAAAATGTGTGCGAAC
DroAna_CAF1_left   ----TAATTTTATTTTT-ATTAATTATTTATGGTTTATTTTTAATTTTTAATTTGCTTTTCTGTCGCAAGTTTCTCAACTATTTTAGCCATGCAATTTGATGAATGAATTGCGAATGACC

DroMel_CAF1_left   AAAACGAAATG------------------
DroSec_CAF1_left   AAAACGAAATGGAAGCACAAAAGATAAAA
DroYak_CAF1_left   AAAACGAAGTGGAAGCA----------TA
DroAna_CAF1_left   GA--C-AAT------------------GT