CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AGG-AGCTGGGCGATTTTGTTAGA-AGCTATACGGTGAAAATAAGCACAAAGGATTCCATTGTCCATCAAAAATATACGAAAACGT------TAATTATCCTCGATAGTATAGTGGTTAG
DroMel_CAF1_left   TTT-AATTTACTAGAGTAATTTTA-GCTTAGTCCTTGAAATTTTAAGGAAAGGGTTTCATTGGGCATTAAAAGTATTCGAAAGCAT------TCGTAATCCTCGATAGTATAGTGGTTAG
DroSec_CAF1_left   TTT-AATTTACTAGAGTAA-TTTTAGCTTAGTCCTTGAAATGTGGAGAAAAGGGTTTCATTCGTCATTAAAAATATTCGAAAACGT------TCGTATTCCTCGATAGTATAGTGGTTAG
DroYak_CAF1_left   CAATATTCTTTTGGTCCTTAAAAT-GTAAAAATAATTGAATTTCTTGTACCTTTT-TTAGAGAAACGTATTCAATTGGAAAGACAT------TCGTTATTCTCGATAGTATAGTGGTTAG
DroSim_CAF1_left   TTA-------TGAGGGTAA-TTTTAGCCCAGTCCTTGAAATGAGGAGAAGAGGGTTTCATTCGGCATTAAAAGTATTCGAAAACGTTGCAAATCAACATCCTCGATAGTATAGTGGTTAG

DroEre_CAF1_left   TATCCCC-GCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGACGTAAAGGGATTTCTTT-TTTTCTTAACTCTCTT-TTTATGTGAAT-AATAAAATATCAGCT-ATAAA
DroMel_CAF1_left   TATCCCC-GCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGACCGATAAAATATATATTTCTTTTTAAAACCGCATTATCATGTAAAT-AATAAATTATGC----GCTAT
DroSec_CAF1_left   TATCCCCCCCCCGTCACGCGGGAGATCGGGGTTCAATTCCTTGTCGGGGATACAG-CAGAGAATAT----TTTTTTGAAC-CACTT-TTCATGTAAAT-AAAATTATACAGACTCTACAC
DroYak_CAF1_left   TATCCCC-GCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGACGA-TAAAAAATATATA-TTTTTTAAATATACTT-TTTATGTGAAT-AATAAATTATCAACC-ATCAT
DroSim_CAF1_left   TATCCCC-GCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGATGTGTATTAGTTTTTTT-TTTTTGTTACTATTTC-TTTTTAATAGTCAATTATTAGGCAAT--ACCAA

DroEre_CAF1_left   T---TA-GTAAGTTTTAAATTATTCGATTAAACGATTCTGTGAGGTGACAAAAACGAAATAAATCTGCAGCAGATAAAAAAAAACTCTCATTCT
DroMel_CAF1_left   ACTTCT-ACTTTTAGAATTATTTCAATAATAGAAGGTGAAGTAACAGACAATAAAAGATTTGAAAAAAAAAAAAAAATGAAAATCTCATTTCTC
DroSec_CAF1_left   T---GT-A-AA-TTCCAATTAAGTCTTGAGTACCAGAAGAAAACAAGNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
DroYak_CAF1_left   G---AT-ATGATGTCCCATTTTCTAATTAATTGAATAATCAAAAATAAATACTTAAAAACAAAGAAAAGAAATTAAATCTGTATAAAAGTTGGA
DroSim_CAF1_left   A---CCAATATTTTTCAAAAATAATAACAAAACCACCT----CGACCACTAGTGGTCAATTCCCATTAAATTCCCCCAGGCATTAGACCCTAAA