CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   TATGGCAAATCTTAATCCTATGAAAG--TAACTATAATAGTTCCTCTTAGAACGAAACAGAAACTGACTTTGTGTACAACCTCTATAAGAATTAGTTTTCGATCGACCGTTTTCAAGGTC
DroMel_CAF1_left   GTGACTATAG-AGAATCTCAT-AAAAAGTTACAAAGATAGGTCCTTTCAGAACCATACAGAAACTAACTACGACCACATCCTCTATAAGAATTAGTTTTTGCTCGAATATTTTCAACGTC
DroSec_CAF1_left   GATAAACTTGCAGAATTACG--TAGAATCTGTATATAGGGAATGGAAAAGAACAAAATAGAAACTAACTACGACTACACCTTCTATAAGAATTAGTTTTTGCTCCATCGTTTTCAACGTC
DroSim_CAF1_left   GATAAACTTGCAGAATTACGGAGAAT--CTGTATATAGGGAATAGCTAAGAACAAAACAGAAACTGACTATGACTACACCTTCTATAACAATTAGTTTTTGCTCCATCGTTTTCAACGTC
DroYak_CAF1_left   AAGCTTGTAGTATTTCATATGAAAAG--TAACTAAAATAGGTTATCTTAGAAGAAAATAGAAACTGGTATTGAATACAGCCAGTATAAGAATTAGTTTTTGCTCGAGCGCTTTCAACGTC

DroEre_CAF1_left   CTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGAATCGTTGATTCTTTTTTTCCTTTTTACTGGTTAATA-TA-AACAGTTA-
DroMel_CAF1_left   CTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGAATCTGTGATTCTTTTTTTTTTTCTTTTA--CTTTGTTAT-ATAAACAAT
DroSec_CAF1_left   CTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGAATCTGTGATTCTTATTTTTTGCTTTTTA--CTTTGTTAT-CTAAACAAT
DroSim_CAF1_left   CTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGAATCAGTGATTCCTTTTTTTTTTGCTTTTTACTCTGTTAT-ATAAACAA-
DroYak_CAF1_left   CTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGTCGGGGAGAATCAGTGATTCTTTTTTTGCCTTTTATT--TATATTTTTGTTTAAATA-

DroEre_CAF1_left   TTTTTAATTTAGTAAAACAATGTAAATTATTGAAAATGTAATTTGGCATTGCC--TTTTAGGAAT-CTCA---G-GCATCCA
DroMel_CAF1_left   TTTT-GTTTTAATTGAATCTAATTTGCCATTGCTTTTAGGAATCT--CAGGCATCCAGCAAG--CGTTTGTCCGCCGAATCG
DroSec_CAF1_left   TCTG-GTTGTAATTAAATCTAAATTATCCTTTCTTTTAGGAATCT--CAGGCATCCAGCAAG--CGTTTGTCCGCCGAATCG
DroSim_CAF1_left   TTTCTATTTTAATTGAATCTAAATTATCCTTTTTTTTAGGAATCT--CAGGCATCCAGCAAG--CGTTTGTCCGCCGAATCG
DroYak_CAF1_left   GTTTTTTTTTTTTTAAAGTGAGA-A-CATATGACTCATGTAAAGT--ATATAAAAT-GTAAT--TTTTTTAGTGAGAGCATA