CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroAna_CAF1_left GAGGTAAGTCATCGCAAAATATTTACACTTTAAGAGTCTAGGGGGTTCTGTAAAAAAAATGTGCTGTTCAAATTTCTCAATGTAAGCCCCATTCCGTGTAGGCGGTA-TCC-TTCCCCCC DroGri_CAF1_left GGACAGAGAGGTAAATATAATAGACTACCTCATAAATCAATCACAATGAAAAAAGTTATTGCGCCGTTTGAATTTCCCTACGTAAGCCCCATTCCGTGTAGACGGGG-GAG-GAGGATAG DroMel_CAF1_left CCAAGGGGGGTGGGGGTTATATATATATATGTTATGATATCGTTGTATAAAAAAGGGAGTGCGCCGTCCGAGTTTCCCAATGTAAGCCCCATTCTGTGTAGGCGGTTTCTCAGACGAGAA DroSec_CAF1_left AGGGGGGGTTATATGTACATATATGATATGATATACATATGTAGTAATAAAAAAGGGATTGCGCCGCCCGAGTTTCCCAATGTAAGCCCCATTCTGTGTAGGCGGTTTCTCAGCCGAGAA DroSim_CAF1_left ATGTACATATATGATATGATATACATTATGATATACATATGTAGTTAAAAAAAAGGGAGTGCGCCGTCCAAGTTTCCCAATGTAAGCCCCATTCTGTGTAGGCGGTTTCTCAGCCGAGAG DroYak_CAF1_left GATTCCAAAGTGCGGGGATATGATATATAATATAGTATATACTATAAAAAAAGGGATTTTGCGCCGTCCAAGTTTCCCAATTTAAGCCCCATTCTGTGTAGGCGGTTTCTCGGCCGAGAA DroAna_CAF1_left ACTCCGA--GGAGTTAGAGGGGAAAGGTCCTACCAACTCGTCCATATCTGAGGTGAAGAACTCTGGCAGATTTCCGCAGACAACCGGACGG--CAAG--GATTCAGGATCCTTTCGAATC DroGri_CAF1_left GCGTTGTGATACGC-C-C-CCCTCTTCCCCCGCCCACTCGTCCATATCTTAA----ATATCTCTGGCACATTTCCGCAGTCAACCGAGCGCAACAATTCGAGTCCCTTGGAGCGGGTCTC DroMel_CAF1_left AGTGTGTGAACACCA--C-CCGCCGAGTCCTACCAACTCGTCCATATCTAAG---AT-TACTCTGGCAGATTTCCGCAGACAACCTGGCGCG-TA---------AGGATTCGGATAAAAT DroSec_CAF1_left AGTGTGG-AACACCAA-C-CCGGCGAGTCCTACCAACTCGTCCATATCTAAG---ATTTACTCTGGCAGATTTCCGCAGACAACCTGGCGCG-TA---------AGGATTCGGATAAAAT DroSim_CAF1_left GGTGTGGGAACACCAA-C-CCGGCGAGTCCTACCAACTCGTCCATATCTAAG---ATTTACTCTGGCAGATTTCCGCAGACAACCTGGCGCG-TA---------AGGATTCGGATAAAAT DroYak_CAF1_left -GAGCGTGAACTCCG--C-CCGGCGAGTCCTACCAACTCGTCCATATCTAAG---AT--ACTCTGGCAGATTTCCGCAGACGACCTGGCGCG-TA---------AGGATTCGGAAAAAAA DroAna_CAF1_left CTTCTTCATCACTACGCCTGGCGAGATTCCGCGAAATATAGGCGAATGCG-----CAC-AA-AAACGCAC DroGri_CAF1_left TCTTCATTGGAGTACGCATGGCGAAATACCGCGAAATATAGGCGTAT---------AT-AT-AATATTTG DroMel_CAF1_left CCTCTTCATCCATACGCCAGGCGAAATTCCGCAGAATATAGGCGAATGCACCACCCACCAC-AGGGGTGG DroSec_CAF1_left CCTCTTCATCCATACGCCAGGCGAAATTCCGCAGAATATAGGCGAATGCACCAC-CACCACAGGATGATG DroSim_CAF1_left CCTCTTTATCCATACGCCAGGCGAAATTCCGCAGAATATAGGCGAATGCACCAC-CACCACAGGATGATG DroYak_CAF1_left CCTCTTCATCCGTACGCCAGGCGAAATTCCGCAGAATATAGGCGAATGCAAAAC-TCACTCAACAAAGTG