CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroPer_CAF1_left   ATCTCTCAGTTGTTCTCTCTTTCACGCT-CATTATTCTTTATTTCCAAGCACCGCTGAGCGGGGTGGGTGATATAAGGCATTTGGCGCCGCTCTTCACAGTGCCTCTTTAGCTCAGTGGT
DroPse_CAF1_left   ATCTCTCAGTTGTTCTCTCTTTCACGCT-CATTATTCTTCATTTCCAAGCACCGCTGAGCGGGGTGGGTGATATAAGGCATTTGGCGCCGCTCTTCGCAGTGCCTCTTTAGCTCAGTGGT
DroYak_CAF1_left   TTGA-TCCGCTGCTCATAATTCTAACCGCCTTTATTCTTACTCTCTTTGCACCACTCACAGGGTTATTTCCCATAGCGTATTTGGCAGCGATCACCACGTCGCCTCTTTAGCTCAGTGGT
DroMel_CAF1_left   TCG-ATCAGCTGCTCATAATTCTAACCGCTTTTATTCTCACTCTCTTTGCAAAACTCACAGTGTTATTTCCGATAGCGTATTTGGCACCGATCACCCCATCGCCTCTTTAGCTCAGTGGT

DroPer_CAF1_left   AGAGCGTTGGTCTCGTAAACCAAAGGCCGTGAGTTCAACCCTCACAGGAGGCAAGTGGCAAACTTTCATTAGGTT-TCTTTCCTTTTTTTTTTCTTTTTCTTTCAGATATTATTTAAATA
DroPse_CAF1_left   AGAGCGTTGGTCTCGTAAACCAAAGGCCGTGAGTTCAACCCTCACAGGAGGCAAGTGGCAAACTTTCAATAGGTT-TCATTCCTTTTTTTCTT-------TTTTAGATATTATTTAAATA
DroYak_CAF1_left   AGAGCGTTGGTCTCGTAAACCAAAGGCCGTGAGTTCAACCCTCACAGGAGGCAGTT--TAGGAAATATATTTTTTGGCCTTGCCCCTA-ATTA-------AATTTTTTTTTTTTAACAAA
DroMel_CAF1_left   AGAGCGTTGGTCTCGTAAACCAAAGGCCGTGAGTTCAACCCTCACAGGAGGCAGGTT-TCGAAATATTATTTTTGTGCTCTGTAATTC-CGCTTT------ATGTAAAACAGTTCAAATT

DroPer_CAF1_left   TGAGGGTTGATTT-TATATGTAATTCATAGCTGCCTT-----TGAGAACACTCCAATGTAGT--------ATTTTTCTACTTATGGCCCT--CAAG-
DroPse_CAF1_left   TGAGGGTTGATTT-TATATATAATTCATAGCTGCCTT-----TGAGAACACTCCAATGTAGT--------ATTTTTCTACTTACGGCCCT--CAAGA
DroYak_CAF1_left   TTAAATAATATTG-AACAAAATGTTCTAATGCTCTAAA----CAAACTTGTTTTTTTAAGTACTGATTTGTTGACATTACTTTAAGCGTAAGTTTT-
DroMel_CAF1_left   TTATTGAAGCTATCATGAAAAAGGACGCAGGTACTGTCCTAAACAAACATCTTGTTACTAGA--------CTTATTAGTTTGTAAA--CA--TTGT-