CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroEre_CAF1_left -TATT-A-CCTC-GGCAATCAGGCAGATCTTTA--------AGCAAACGAAATTA--AATAAATCGGTATACAAA-TCAAATGCATCTTC-ATTCAAT-AAT----TTGC-TTA--TTAT DroMel_CAF1_left -GAAA-A-ATTATAAGCA---TTGCTATTAAGC-AATGAA-TAAAG---CCTACT--CATTTTTAAAAATGA--T-CATACAAGCAATAA-AAGAAAATGTT---TACAA-ATC----AC DroMoj_CAF1_left -CAGA-C-CGCA-GAAAC----GCTAATGC-AAATAACT---GCCGTCCATTTCG--AGTGCATTAATGTGGA-AATTATGT-GCACAGCCGCAGTTA-ATT----ACAC-AAA--AAAG DroPer_CAF1_left GCTTT-G-ACCA-AGAAC----CTTGATGC-AAATAATT---ACC------CTTG--AGTGCCTTTAACTGGA-AATAATGG-CTGCCACAGA-TAAG-TGT----GCAA-AAA--AAAG DroPse_CAF1_left -CTTT-G-ACCA-AGAAC----CTTGATGC-AAATAATT---ACC------CTTG--AGCTCCTTTAACTGGA-AATAATGG-CCGCCACAGA-TAAT-TGT----ACAAAAAA--AAAG DroSec_CAF1_left -ATAAGA-AATACTGA-A---GCTAGATCGATAAGCATATTGGTTT---GCAGCA--ATGTTGAAAGAGTTC--A-AAAATTTGCTATCA-A-GCAATGATA----AAAC-CCT----AT DroSim_CAF1_left -TAAG-A-AATACTGAAT---GCTAGATTGATAAGTATATTGGTTT---GCTGCA--ATGTTGAGAGAGTTA--A-AAAATTTGCTATCA-A-GCAATGATA----AAAC-CCT----AT DroVir_CAF1_left -GACC-G-ACCACAAAAC----GCTAATGC-AAATAATT---GCCGTCCATTTCG--AGTGCATTAAACTGGA-AATTATGT-GCACAGCCGC-AGTT-AAT----TACA-CAA--AAAG DroYak_CAF1_left -CAGA-TCTTAA-AACAAATTAAATCAAATAAA---T---CGGTAAACAAAAACA--AATGCATTTTAATTC--C-ATAACTTTCTATCA-AGCAATG-GGT----TTAC-CTT-TTCAT DroAna_CAF1_left -TTTA-T-AAAAATATACA--ACTCAAAGAATACATCCAAAAGTGT---ATGAAAAAAATCCTTGTTACT-C--T-TTTTTTTTTTTTTT-A-GCTTTGAAATTAAACAC-TTATTTGCA DroEre_CAF1_left TTTTTT--AATAA-TAA---TCATGCA--AA-AAAACCGTTTTACTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCTC DroMel_CAF1_left G-TTGT-TTA--A-AAAGAAACTAAAATAAAACAGGAAGCTTTATTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCCC DroMoj_CAF1_left GA-AAATAATT-A------AACAA-AAAAGTCAGCGAACTGTATTTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCAA DroPer_CAF1_left GA-AATGTCCTTT------AAAAA-TAAAAGCACAATATTAACTTTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCGT DroPse_CAF1_left GA-AATGTCCTTT------AAGAA-AAAAAGTACAATATTAACTTTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCAT DroSec_CAF1_left G-TTGT-TTA--A-ATCTAAAATAAAACAAAAAAGAAAGTTTTACTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCTC DroSim_CAF1_left G-TTGC-TTA--A-ATCTAAACTAAAACAAAAAATAAAGTTTTACTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCTC DroVir_CAF1_left GA-AAATAATC-A------AACAA-AAAAGTCATTTTACCAAAGTTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCAG DroYak_CAF1_left T-TTAAAGAATGATCATCCATCAATCATAAAAAAAACAATTGTCCTGGAGATGCGGGGCATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCTC DroAna_CAF1_left AT-GGAAATTCCA-------AAAA-ATAAAATAAAAAAGTCCCTATGGAGATGCGGGGTATCGATCCCCGTACCTCTCACATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCTT DroEre_CAF1_left TTAGTCCGCCCTCCGCGGAAAGGCGTGTGAAAAA-TGGCCCACCGTCCACCTAGT-CATT--GATAGACAGG-CTAATTATG----CTGGTCACCTTGTTTCAAATGCGGCCAGAAAGAT DroMel_CAF1_left TTAGTGATTCATTCGCGGGGAGG---T--AAAAA-TCGCGCACAGCTCTCGTTAT-TATG--GACAAACCTGAATAAACATG----CTGATCAGCTTGTTTCAAATGTGGCCACGCTGAT DroMoj_CAF1_left TTGGTACCGCAGAAAATAA--TAG--TCTGCTTTGAAAA-C-GGACAAATGTCATG--CAGTGATTTATGGATTTCATGCATTTAACCTTGG-A-ATTTGAGAAAGGGCCATGT----TT DroPer_CAF1_left GTGTATTTCCGCTCGTCCA--AAG--GTCTACTTGGGTT-CCTTCCACCAGAGAGTGGTAA-TTTATACCTGAAACATGCAGTTTATCTATT-CGAAGACTGACCTCCAATAGAAAACAA DroPse_CAF1_left GTGTATTTTCGCTCGTCCA--AAG--GTCTACTTGGGTT-CCTTTCACCAGAGAGAGGTA--TTTATACCTGAAACATGCAGTTTATCTGTT-CGAAGACTGACCTCCAATAGAGAACAA DroSec_CAF1_left ATAGTGATTCATTCGCGGGGAGGTGTGTCAAAAA-TGAAGCACCGCTCTCGTTAT-TACG--GATAAACCGGAATAAACATG----CTGATCAGCTTGTTTCAAATGTGGCCACGCTGAT DroSim_CAF1_left TTAATGATTCATTCGCGGGGAGGTGTGTCAAAAG-TGGAGCACCGCTCTCGATAT-TATG--CATTAACCTGAATAAACATG----CTGATCAGCTTGTTTCATATGTGGCCACGCTGAT DroVir_CAF1_left TTGAATATATGCGAAATAA--CGG--TCTTTTTT-AAGGCA-ACAGAATCG-CTTACATT--GATTTATGTGTTATTTTATGT--A-TTTAA-CCTTGTATTTTCGGAAAGGGTCACG-C DroYak_CAF1_left CTAATCCAAACTCCCCGGAGAGGTATGTGAGAAA-TGGCCAACCGCTCTCGTAGT-CAAA--AATACATTTG-TTAATTATG----CTGGACAGCTTGTTTTAAAAGCGGCCACGAAGAT DroAna_CAF1_left ATGCATTTCCGCCGGCCA---AGAGGCCTACTTC-AATTTCTCTACACTGCGGT---TTA--TAAATAGTGACTTAAATATG----CAGTTTACCTTGTCGAAAACGTGACAACAATAGA DroEre_CAF1_left -AACA---AAA----GA DroMel_CAF1_left -AACA---AAAGACATT DroMoj_CAF1_left -TT-T---ATA----AG DroPer_CAF1_left -AA-G---ATA-----C DroPse_CAF1_left -AA-G---ATA----CC DroSec_CAF1_left -AACA---AAA-----G DroSim_CAF1_left -AACA---AAA-----G DroVir_CAF1_left -AT-T---TTT----AA DroYak_CAF1_left -AACG---AAA----GA DroAna_CAF1_left TAACAAAAAAC----AT