CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroAna_CAF1_left   NNNNNGGTAGCCACGTGTCTGAGCTGTGAGAGGCAAGGTGTGGCGAGTCGCGTGCGAGCCGAAACGTAAATGCGGTTACGAGG-TGCGGCAGGCGTGCGGCTCAATGGTCTAGGGGTAGG
DroGri_CAF1_left   TCTATAAATAGTTCCCACTATTTTGGCTTAGTTGAGTTTTGAGCACCACTATCTTTGAATGAACACAAAACTATTTACGGCGC-CCCAACCACCAAGCGGCTCAATGGTCTAGGGGTATG
DroMel_CAF1_left   CTTAATTAAAGTGGTTTTGCTTGTTTATTTACAGCAGTGTTTTTGTTTGC-GTAGCCTGATAAAGTAAAATGTGCAATTATCAGGCCAACGGACAAGCGGCTCAATGGTCTAGGGGTATG
DroMoj_CAF1_left   CACTCCTGATCTACTTTCACAATTAAATTTGTTGCATAAATACAAATTGTGTCGTAAAATGAATACAAAAAGCAAAACTGTCA-TGCTCGAGCCATGAGGCTCAATGGTCTAGGGGTATG
DroSec_CAF1_left   TTTAATTAAAGCGGTTTTGCTTGTTTAATTACAAAAGTGTTTTTGTTTGC-GTAGCCACATAAGGTAAAATGTGCAATTATCAGCCCAGCGGACAAGCGGCTCAATGGTCTAGGGGTATG
DroWil_CAF1_left   AAGAAGCTTTATATCTTACATGGTGAAATGCATTTGTTAAAAACGTCACAAACAGCATGCAAATGCAAAAATGAAATCAAGCC-AGCAACTGGCAAGAGGCTCAATGGTCTAGGGGTATG
DroYak_CAF1_left   GTTTTGCTTGTTCATTTGCAATCGTATTTTTGTTGTATTTACTCGTTTGC-CCAGCGATATAAAGTAAAGTGCGTAGTTAGAACCCCTGCGGACAAGCGGCTCAATGGTCTAGGGGTATG
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

DroAna_CAF1_left   ATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCGGCTATCAAATTT-TTTTTTATTATTTAATTTTTTTAATG----TTTTTATTATATGCACT-TTAT--TT
DroGri_CAF1_left   ATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCATTC--GAA-TTTTTTGTTT-AT--TTATATATTCGCTT-----AATGGTTATTTAATGTACCTTGA-GC
DroMel_CAF1_left   ATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCGTTC--TAA-CTT-TTTGGAACT-TCGTAAAATATTTTTT----AAATAAATATATT---T-AAATT-TT
DroMoj_CAF1_left   ATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCAGAC--CCT-TTT-TTTTATATT--TTTAGTATTTTTAAC----TTTCAAATTTCAAATTA-TAAG--TG
DroSec_CAF1_left   ATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCGTTC--GAA-TAT-ATTATAAAT----ATAAATATTTTTT----AATTAAATGTATT--TT-AAATTTTT
DroWil_CAF1_left   ATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCGGCA--A-----T-TTCTTTTTTTTTACTTTTAGAGTAGAAACTATTTTGTTAAT-----T-AAACT-AA
DroYak_CAF1_left   ATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGTTGAGCCCGTCT--GAA-TTT-TTTTAAACT-TAATATATATAATTAC----TTTAAAATTATTA---T-AATTT-AT
DroSim_CAF1_left   NNNNNNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNN-NNN-NNNNNNNNN--NNNNNNNNNNNNNNN----NNNNNNNNNNNNN--NN-NNNNN-NN

DroAna_CAF1_left   AATATTTTATAATTAAATAAATAATGAAAAAATAATATT-AAA-----GAAACTGTAGAAATATTCCATTTACG
DroGri_CAF1_left   ACTTTGCGTTTTAAATTTTAAAAAACGGGCAATGCAAAGTAGG-----CAG-C-TTTTATAATTTTTATTTGAA
DroMel_CAF1_left   TTTAAGCAAAACATAATTTAAAAAAATATAGTTGATAAC-AAA-----AATTATTATCAATTGGAGATGCGGGG
DroMoj_CAF1_left   TTAAAACATCAGTAAAAATTATTGTTACATTTAAAAACA-AAA-----ATATTAGTATAAAAATAAAATATATA
DroSec_CAF1_left   TCTAAACAAAACATAATTAAAAAATAAA-GTTGATA-AC-AAA-----AAATTGATATCAAAATATTTTTATAT
DroWil_CAF1_left   ATTTATTATAAAAATTGTTTAACAAAAAGAAAATGTACC-AAAAAAATTACACACCAATTTGGAGATGCGGGGC
DroYak_CAF1_left   ACAGAAAAAACTATTTTTTTTTAACATATACATAATTGA-TAA-----AAAAAAAAAAGTAGGTTACCGACTGG
DroSim_CAF1_left   NNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN-----NNNNNNNNNNNNNNNNNNNNNNNNNN