CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AAAGTTTTAT------ATT---TCCTGAGGT--ATAAATAGTTA--TAGTTTGTTTATATAGTTTAAATGAATTTAAAGTTTAATT-ACTTTA---TTATT-AGAACAATCCAATTAAAA
DroSim_CAF1_left   TAAAAAC-AAAAAGTTAAATTAAAAAGCGACATAAATCCTAAGTTATATTTACTATCACTTAATTAAATTCAATTACTTAGGTTCTAGAAAAA--CGCAAT-TATCC----A-AAATTGT
DroYak_CAF1_left   TCATGTACCCTAAGTTATA---ACTAATTATAATTTCCATTAATCTAATAAATGGAAAATTCAATTATTTTAATATTTGAATCCAC-TTAAGT--GAAAAT-AATTC----TTAAAAATA
DroMel_CAF1_left   AGAACAACAA---CTTAAATTAAAAAGCAACATAGGCCCTTAGTTATATTTTCTATCAATTAATTGAATTCAATTACTTCAGTACCAGAAAAAAGCTAATTTAACCC----A-AAAATTG

DroEre_CAF1_left   AAAAAT--TTTT--TG--CGATCCTGCCAGGAGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCGCCACAGGACCGATGAGCTTACGAAAACTTTGAGCCAACA
DroSim_CAF1_left   AAAAAA--TTCA--ATTCCGATCCTGCCAGGAGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCGCCACAGGACCGATGAAATTACAAAAGCTTTCATACATCA
DroYak_CAF1_left   AAAAAT--TAAA--TG--CGATCCTGCCAGGAGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCGCCACAGGACCGATGGGTTTACGAAAACTTGGAGCCAACA
DroMel_CAF1_left   TAAAAAGGTATAGTTC--CGATCCTGCCAGGAGTCGAACCTGGAATCTTCTGATCCGTAGTCAGACGCGTTATCCATTGCGCCACAGGACCGATGAGTTTACGAAAGCTTCCATCCATCA

DroEre_CAF1_left   TGTAGCCGGAACACTTGTTTCTATAA--ATAGACCCGAAATATTCATTGATCTTGTGCTCGTCTTTTTTGGGCACTCTGATCTCATTATG
DroSim_CAF1_left   TGTAGCCGGAAAACTAGTTTCTATAAAAAAAGATCCAAAATATTCATTGATCTTGCTATCGTCTGTTTTGGGCACTCTGAATC--TCATT
DroYak_CAF1_left   TGTAGCCGGAAAACTAGTTTCCATTA--ATAGACCCGAAATATTCATTGATCTGGCGCTCGTCGTTTTTGGGCCCTCTGAATCTCATTAT
DroMel_CAF1_left   TGAAACCGGAAAACTAGTTTCTATAA--ATAGATCCAAAATATTCATTGATCGTCTGTTTTGGACACTCTGAATCTCATTATGTAAATTA