CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   AATGCCGCGTACATGGAAGTGTTCTGAACAGCAAATTTGTTACGAAAATCCGAAGCTAAGCTACTAAGTTACTTAACCAACAAATTTTGAAAGTGGCTGACTCGGGCAACTGTCGCCGGC
DroSec_CAF1_left   AATGCCGCGTACATGGAAGTGTTCTGAACAGCAAATTTGTTACGAAAATCCGAAGCTAAGCTACTAAGTTACTTAACCAACAAATTTTGAAAGTGGCTGACTCGGGCAACTGTCGCCGGC
DroSim_CAF1_left   AATGCCGCGTACATGGAAGTGTTCTGAACAGCAAATTTGTTACGAAAATCCGAAGCTAAGCTACTAAGTTACTTAACCAACAAATTTTGAAAGTGGCTGACTCGGGCAACTGTCGCCGGC
DroYak_CAF1_left   AATGCCGCGTACATGGAAGTGTTCTGAACAGCAAATTTGTTACGAAAATCCGAAGCTAAGCTACTAAGTTACTTAACCAACAAATTTTGAAAGTGGCTGACTCGGGCAACTGTCGCCGGC
DroMel_CAF1_left   AATGCCGCGTACATGGAAGTGTTCTGAACAGCAAATTTGTTACGAAAATCCGAAGCTAAGCTACTAAGTTACTTAACCAACAAATTTTGAAAGTGGCTGACTCGGGCAACTGTCGCCGGC

DroEre_CAF1_left   TTCAGCACCGGACCGCCGCCCGTCCCCGCCCAATACGGCTCCCGGTCGAGACCGGACTACGCGGGGCGGAGGGGGCGACGGATCGGGGGTGCGTGACCGTGCGTCGACCGCCGGATAACC
DroSec_CAF1_left   TTCAGCACCGGACCGCCGCCCGTCCCCGCCCAATACGGCTACCGGTCGAGACCGGAATCCGCGGGGTGGAGGGGGCGACGGATCGGGGGTGCATGACCGTGCGTCGACCGCCGGATAACC
DroSim_CAF1_left   TTCAGCACCGGACCGCCGCCCGTCCCCGCCCAATACGGCTATCGGTCGAGACCGGAATCCGCGGGGTGGAGGGGGCGACGGATCGGGGGTGCATGACCGTGCGTCGACCGCCGGATAACC
DroYak_CAF1_left   TTCAGCACCGGACCGCCGCCCGTCCCCGCCCAATACGGCTCCCGGTCGAGACCGAAATCCGAGGGGTGGAGGGGGCGACGGATCGGGGGTGCGTGACCGTGCGTCGACCGCCGGATAACC
DroMel_CAF1_left   TTCAGCACCGGACCGCCGCCCGTCCCCGCCCAATACGGCTTCCGGTCGAGACCAGAATCCGCGGGGTGGTGGGGGCGACGGATCGGGGGTGCATGACCGTGCGTCGACCGCCGGATAACC

DroEre_CAF1_left   CGTCGTTGTCCGGCGGAAGGCAGCGGAAAGCCGATCCGGACGAGGAGCCACGGCAACGCCAGGCAGAATTACTGGGAAACACAAAGGTGTGACGGAGGGTCGGCTCTGAACAGATCTGAT
DroSec_CAF1_left   CGTCGTCATCCAGCGGAAGGCAGCGGAAAGCCGATCCGAACGAGGAGCCACGGCAACGCCAGGCAGAATTACTGGGAAACACAAAGGTGTGACGGAGGGTCGGCTCTGAACAGATCTGAT
DroSim_CAF1_left   CGTCGTCATCCAGTGGAAGGCAGCGGAAAGCCGATCCGAACGAGGAGCCACGGCAACGCCAGGCAGAATTACTGGGAAACACAAAGGTGTGACGGAGGGTCGGCTCTGAACAGATCTGAT
DroYak_CAF1_left   CGTCGTTGTCCGGCGGAAGGCAGCGGAAAGCCGATCCGAACGAGGAGCCACGGCAACGCCAGGCAGAATTACTGGGAAACACAAAGGTGTGACGGAGGGTCGGCTCTGAACAGATCTGAT
DroMel_CAF1_left   CGTCGTCATCCAGTGGAAGGCAGCGGAAAGCCGATCCGAACGAGGAGCCACGGCAACGCCAGGCAGAATTACTGGGAAACACAAAGGTGTGACGGAGGGTCGGCTCTGAACAGATCTGAT

DroEre_CAF1_left   AAGCAGATGCAGTTACCTGAATATCGATCAATGTACAGAACAATCACAGAATACACTTCCGAGTAAAAAGGAAGCCGGTGTCGTATTTATACTACCCATTTTTCGAATAAGCACTTGGGA
DroSec_CAF1_left   AAGCAGATGCAGTTACCTGAATATCGATCAATGTACAGAACAATCACAGAATACACTTCCGAGAAAACAACAAGCAGCTGTCGTATTTATACGAGAAATTCACCAAATAGGCGCTTGGGA
DroSim_CAF1_left   AAGCAGATGCAGTTACCTGAATATCGATCAATGTACAGAACAATCACAGAATACACTTCCGAGGAAATATCAAGCAGCTGTTGTATTTATACGAGCAATTCACCAAATAAGCGCTTGGGA
DroYak_CAF1_left   AAGCAGATGCAGTTACCTGAATATCGATCAATGTACAGAACAATCACAGAATACACTTCCGAATAACTGTAAAGCTTGTGTTGCATTTATACGAGAAAAATTCCGAATAAGCACTTGGGA
DroMel_CAF1_left   AAGCAGATGCAGTTACCTGAATATCGATCAATGTACAGAACAATCACAGAATACACTTCCGAAGTAACGGGAAGCAGATATCGTATTTATACGAGTATTTGACCAAATAAGCACTTGGGA

DroEre_CAF1_left   ATTACAAGCTGCCAGT-AGCCAGACGTGCTGGGTGCG-CACCAAATCGGGGTGGGTTTTCGCCTTTGCTTGCGCATTAAAGC
DroSec_CAF1_left   ATTACAAGCTGGCAGCCGGGTAAACGTGCTGTGTGCCAAACCTAATCGGGGTGGGTTTTTGCCTTTGCTTTCGCATAT--GC
DroSim_CAF1_left   ATTACAAGCTGGCAGCCGGGCAACCGTGTTGTGTGCCAAACCAAATCGGGGTGGGTTTTTGCCTTTGCTTGTGCATAT--GC
DroYak_CAF1_left   ATTACAAGCTGCCTGTCAGCCAAACCTGCTGGTGCGC-CATTGAATTGGGGTGGGTTTTCGCCTTTGCTTGTGCATAAA-AA
DroMel_CAF1_left   ATTACAAGCTGGCAGTCGGGCAAACGTGCTGTATGGCAAACCAAATCGGGGTGGG-TTTTGCCATTGCTTATGCATACC-CG