CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA DroEre_CAF1_left TG--T-C-A-CCACCAC-TGAGA-TGGTATTCTGGGCATACTCTTAAAAAATAAAAAAACAA-AAATT---T-G-ACG-GC-CAT-T-AACATTAC-----ATTAGTTAAAAAAAAAGTG DroGri_CAF1_left CA--AGC-TTATATAAC-ATTATTACTAAGACTACCAACTGA-GTTGTCGAAAAATATAAACCTTAAA---T-C-AGA-TT-TTA------ACAGT-----TATTCCAAAATTTA-AACC DroMel_CAF1_left CA--A---AGACACTAG-AA----TAATTATTATTATTCTTA-TTATTATTATTATATTTAT-AATTA--TT-CTAGT-GCCTTT-GCTTGAAGTC-----TTTGCAAAACAAAAAAATT DroMoj_CAF1_left TG--C-C--TCCATTGG-TTA-A-AAGACTTGAGCTGATGGT-CATTCGTCAAACCTTTCAA-AACAA---A-A-AAG-TA-CTTCA-GT-ATAAA-----ATACTCATCATATCTATAT DroSec_CAF1_left AT--GGC-AGGCAGTGG-ACGAA-ATGCCGAAAGCTTAATTA-CATAGTAAAAATGTAAGAT-GGTAT---T-C-TGG-GC-ATT-G-TTGAAGCC-----TTTGAAAAA-AAAAAATTT DroSim_CAF1_left T---GGC-AGGCAGTGG-ACGAA-ATGCCGAAAGCTTAATTA-CATAGCAAAAATGTGAGAT-GGTAT---T-C-AGG-GC-ATT-G-TTGAAGTC-----TTTGAAAAAAAAAAAAATT DroYak_CAF1_left TAAGTTTCGGCAGTGTGCAGAAT-GGACCGAAAAGTTAATTA-CAGAGCTCTAATGTGAGTG-CCACC---ACC-ATT-AA-AAA-G-TCTTCTCAAAACAAAAAAAACAATGGCAAACC DroVir_CAF1_left AG--C---AGATCTTAA-ACTAA-TTTAATTGAAAGAAACTA--TA-TGAAAATGACTCTAA-TTACCCGAA-C-ACAGAAATCG-G--A-AACAT-----ATTTGATAAAAAAAAAAAT DroEre_CAF1_left TTTC---ACACATTAGTTAAAAAA-AAAG---TC-TTTCACACCTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGATGTA DroGri_CAF1_left TTAAAAATAAAATTAATAAAAAGA-AGAT---TTCAAAGAT-CTTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGATGGT DroMel_CAF1_left TGGT---GGCCATCAGCTGCAAAA-AAT----CA-TTTCAC-ACTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGAGTTG DroMoj_CAF1_left ATTT---TTATAATATAAAAAAAA-AAAAACCAG-AAATGA-TCTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGATGGT DroSec_CAF1_left TGGT---GGCCATCAGCTGCAAAA-ATAT---AA-TCTCAT-ACTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGAGATG DroSim_CAF1_left TGGT---GGCCATCAGCTGCAAAA-AAAA---AA-TCTCAT-ACTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGAGATG DroYak_CAF1_left AGCT---AAACTACAATATAAAAA-AATCTTTTA-AGACTG-ACTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGATGCA DroVir_CAF1_left AATT---ATAAAAT-TGTAAAAAAGTAAGAG-TG-AAGATC-ACTTCCCATACCGGGAATTGAACCCGGGCCTCCCGGGTGAGAGCCGGGTATCCTAACCACTAGACAATATGGGATGGT DroEre_CAF1_left CAATTCA-GTCGTGTAAACTAGCA---ACTTGCGGCAC-------ATTCAACCTCTCTTGTG------CTATAAATAGAAATT--CAGCCACAGGGAGAC-TCGTGCACGTGCGATTG-- DroGri_CAF1_left TGATTTTGCTCATCGGAAACCTCT---ACACAAATCCA-------AGCAAATGATGTATAAT------ATCTATAAATAGACAAACT-AAGCAGCCTACG-CAGCT-AATAAGTGCAA-- DroMel_CAF1_left AAATATA-TGTGTATAAACTAGCA---ACATGAGCCAC-------ACTCAGCC------GTG------CTATAAATAGAAATT--CAACTACAGGGTGAC-TCGTGCGCGCGAGATTA-- DroMoj_CAF1_left TGTCTCA-AGCGAACAAAA-AGTT---ATACAGCAATCAACTAATTTACACGC------AGT------GCCTATAAATAGACA--GAGCAT-AGAAAACT-TTAGTGCAGCTCTGCTT-- DroSec_CAF1_left CGTGGTT-TATGTGTAAACTAGCA---ACATGAGCCAC-------ATTCAGCC------GTG------CTATAAATAGAAATT--CAGCCACAGGGTGAC-TCGTGCGCGCGGAATTA-- DroSim_CAF1_left TGAGGTT-GACGTGTAAACTAGCA---ACATGAGCCAC-------ATTCAGCC------GTG------CTATAAATAGAAATT--CAGCCACAGGGTGAC-TCGTGCGCGCGGAATTA-- DroYak_CAF1_left CAATTTT-TTCGTGTAAACTAACA---ACATGTGGCAC-------ATTCAACT------GTTCTTGTACTTTAAATAAAAATT--CAGGCACAGGGAGAC-TCGTGCACATCGGA-TC-- DroVir_CAF1_left TAGTTTA-GGCGGCAAAA--ATGCTCAACAAAACTCA---------AACCAAT------AAA------A-AAAAACGACAATT--CTGCTTCTTACTCACAATCTACGCAACAAATAAAC DroEre_CAF1_left AATTCGGACGCTGTTTAA-------CAAGT DroGri_CAF1_left TGCACAAA--ACATAA----AGCA-AAGCA DroMel_CAF1_left GATTCGGACGCCGTTTAACAAGGT-TATTA DroMoj_CAF1_left CTT----ACGCATCAAAACGTAAG-CTAGC DroSec_CAF1_left GATTCGAACGCTGTTTAACAAGTT-ATTAA DroSim_CAF1_left GATTCGGACGCTGTTTAAGAAGTT-ATTAA DroYak_CAF1_left GAATTCGGACGGTGTT-----AAA-CAAAT DroVir_CAF1_left GAACCTCACCC-ACAAGGCAAGCAAATCAA