CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroMel_CAF1_left   CGAAAAAAA--AGTGAGGCGAAATAAGC-GTTCATCAAATTTAACAAAAGAGGAGGCCACTTTCCTTTCCCTTTCAACCATCTGCAGTGTTAC--ACAATCGACTCTATATACAGGGTGC
DroSec_CAF1_left   GGCCAAAAA--AGTGAGGCGAAATAAGC-GTTCATCAAATTTAACAAAAGAGGAGGCCACTTTCCTTTCCCTTTCAACCATCTGCAGTGTTAC--AAAACCGGCTCTATATACAGGGTGC
DroYak_CAF1_left   GGCCAAAAA--AGTGAAGCGAAGTAAGC-GTTCATCAAAATTTACAAAAGAGGAGACCACTTTCCTTTCCCTTTCAACCATCCGCAGTGTTAC--ACAACCGACTC--TATACAGGGTGC
DroWil_CAF1_left   ACTTTTTAGCCCAGCATGCTGTCTAAGATGACACTGAAAAAGCAAAAAACAACCACCAAGTGCCC-AATCAATATGATGAACAATCGAAAATGTTGTGACCCTCGC-ATATACAGGGTGC

DroMel_CAF1_left   TATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGCCCAG---CGAGACAGCCAAAAACGAGGC------CCAC
DroSec_CAF1_left   TATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAG---CGAAACAGCCAAAAACGAAGC------CCAC
DroYak_CAF1_left   TATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGACCAG---CGAAACTGCCAAAAACAAAAC------CCAC
DroWil_CAF1_left   TATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATACATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGTTCATCAGTCATGTGAACGAAAAAGAAAAGTAAAACCTA

DroMel_CAF1_left   ATTGCGTATAC-TTAACA---TTGAGGAAACACATCAAAATAAGCGTACTATTAGTATAAACCCATATG----TACACCATGCATG-T
DroSec_CAF1_left   ATTGCGTATGC-TTAACA---TTGGGGAAACACATCAAAACAAGCGTACTATTAGTATAAACCCATATG----TACAC-ATGCATGTT
DroYak_CAF1_left   GTTGCGTATAC-TTAACA---GAGGGGAAAC--ATCAAAATAAGCGTACTATTAGTATAAACCCATATGTCGGTACAC-ATGCAT--G
DroWil_CAF1_left   AAAACAACAACAGCAACAGTAATAACATAATA-GTTATACTATACGTATACGTTATTTTTTTATATTTT----TTTTT-TTGTAATAT