CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   -TGGAGCGCAGCTGACAATGCTCCCATTTTCCGCCTTGATTTTCGGGAGAGTGTCAGTCGATATCCTGTGAGCAGCTTGGTCAGGTTCCCACAGGCGG-GCCAGGATGGAAAAGCTTGCG
DroMel_CAF1_left   -CTCCCATTTACCCCCTTCATTTTCCGCCCCCGCCCATT-TCGAGGGAGTGTGTCAGTCGATATCCTGCGAGCAGCTTGGTCAAGTTCCCACAGGCGGGGCCAGGATGAAATAGCTTGCG
DroSec_CAF1_left   GCTCCCATTTACCCCCTTGATTTTCCGCCCCGGCCCATT-TCGAGGGAGAGTGTCAGTCGATATCCTGCGAGCAGCTTGGTCAAGTTCCCACAGGCGG-GCCAGGATGAAAAAGCTTGCG
DroSim_CAF1_left   GCTCCCATTTACCCCCTTGATTTTCCGCCCCCGCCCATT-CCGAGGGAGAGTGTCAGTCGATATCCTGCGAGCAGCTTGGTCAAGTTCCCACAGGCGG-GCCAGGATGAAAAAGCTTGCG
DroYak_CAF1_left   CCGATTTCCCCATTTCCGTCCCCACTATTTTTCAGCAGA-GTGTCAGTCGATATCCTGCGATATCCTGCGAGCAGCTTGGTCAGGTTCCCACAGGCGG-GCCAGGATGAAAAAGCTTGCG

DroEre_CAF1_left   CCGCGA-----AGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCG
DroMel_CAF1_left   CCGCGG-----AGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCG
DroSec_CAF1_left   CCGCGG-----AGCGAAAATAAATAAATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCG
DroSim_CAF1_left   CCGCGG-----AGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCG
DroYak_CAF1_left   CCGCGAAGCGAAGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCG

DroEre_CAF1_left   AAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGTACATTTTATTGAAACGAAATTGGTTCATACGATACTGTTCAGCCAGAGCAAAAATGT--GCATTAAAAG-TTCTATTC
DroMel_CAF1_left   AAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT-TTTATTGAAACGAAATTGGTTCAAGTGATATCCTGCAGCAGGAGCTGAAAATT--GCATTATACATTTTATTAC
DroSec_CAF1_left   AAATAAGAATACAACTCGGCAACCAAATCACCACTGTAGTGAACT-TTTATTGAAACGAAATCGGTTCATGTGATATCCTGCAGCAGGATCAAAAAAAAATGCATTATAAA-TTT-GATT
DroSim_CAF1_left   AAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT-TTTATTGAAACGAAATCGGTTCATGTGATATCCTGCAGCAGGAGCAAAAAAAT--GCATTATAAATTTGATTAA
DroYak_CAF1_left   AAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGAACTTTTTATCGAAACGAAATTGGTTCATGCGATACTGGGCAGCAAGAACCAAAGTGA--GCATTGAA-AGTTAAACGT

DroEre_CAF1_left   AAATT
DroMel_CAF1_left   AATTC
DroSec_CAF1_left   AAAAT
DroSim_CAF1_left   AATTC
DroYak_CAF1_left   TTTAT