CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   CATTTATAGCT-TTATACTCTCAAAATTGCATTTTGTAATTTTT---TTCTGT-TAAATTACCGATCCA-AATCGCTAGCCAACAC-TGGATCCAAGGATGACATATCCCATATTGTCTA
DroMel_CAF1_left   AGATCA-AGAACAAAAAGGTAAAGCTTTATTCTTGATGAAAATT---TGTAAT-TTTTTAATTATCAAT-TATCGTTAACCAACAC-TGAATGCAAGAATGTCATATCCCATATTGTCTA
DroSec_CAF1_left   CAAGGGGGTTA-AGCTTTATACTGTCAAAATGGAAATTTTTCTT---TTTAAA-TTGTCGAACTATTAT-AATCGTTAGCCAACAC-TGAATGCAAGAATGTCATATCCCATATTGTCTA
DroSim_CAF1_left   ATCAAGAACAA-AGATATTAGC-TTCTGTCAAAATAGAAATTTG---TAATTTGTTTTTTTTTTTTTAT-TGTCGTTAGCCAACAC-TGAATGCAAGAATGTCAAATCCCATATTGTCTA
DroYak_CAF1_left   ATAAGTACTAA-AATGCTGCAAATACTCTCAAACATGCATTTTG---TTAAAA-CGATCAAACGATCTT-AATCGTTAGTCAACAC-TGGATTTAAGGATGTCAAGTCCCATATTGTCTA
DroWil_CAF1_left   TTAGATTTAGA-----CTTTTGATAAGCCAAGTGAAAAGTCATCTTAAATTTA-TATAGAATCTAATGTATTTCATAGATTGTGGTGCAAAAGCTTCTT-TCACTATCCCGTATTGTCTA

DroEre_CAF1_left   GTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCAATTCCCGGTATGGGAAAATGGTGGAAATGTTTCCTT-TCTTTT-GAGAAACTTA-AAAAAATGTATTT--ATTT-ATT
DroMel_CAF1_left   GTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCAATTCCCGGTATGGGAATATGGTAAAGAAATCT-TCTTTTT-AGAAATTTT-CACTT-TAATTATATTT--ATTT-ATT
DroSec_CAF1_left   GTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCAATTCCCGGTATGGGAATATGGTGAAGAAATCTTCTT-TGTAGA-AATTTA-AACAAA---A--TGTAT--TTGT-T--
DroSim_CAF1_left   GTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCAATTCCCGGTATGGGAATATGGTAAAGAAATCT-TCTTTTT-AGAAATTTA-AACAAAATGTATTTGTTGATCTCGTTT
DroYak_CAF1_left   GTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCAATTCCCGGTATGGGAAAATGGTGAAAGTGTTTTCTT-TTTAAA-AAAAACTTTTCAAAAAATGCATTT--ATTT-TTC
DroWil_CAF1_left   GTGGTTAGGATATCCGGCTCTCACCCGGAAGGCCCGGGTTCAATTCCCGGTACGGGAAGAAGATGATGAACTTTTTTA-TTCCAC-CAC--A-TAGAAGAAATCTTTTCA--TTGT-TTG

DroEre_CAF1_left   GATCTGTATGTTGATCCAAAGG-T-TTAT--AAGAGCAAAAAGCTCTA-------TTCTCTC--GAAATTGAAT----TTTGTTA
DroMel_CAF1_left   GGTCTATTTGTAGATCAAGAAC-A-AAAAGGTAAAGCTTTATTCTT-G------ATGAA-AA-TTTGTAATTTTTTAATTATCAA
DroSec_CAF1_left   GATCTCTTTTTAGATCCAAACG-T-TTAT--AAGAGCAAAAAGCTTTTGTTTTTGTTAAATT-ATCAAACTATTATAATCGTTAA
DroSim_CAF1_left   TAGATTCAAAGGTTTATAAGAG-CAAGAA--GCTTTTGTTTTTGTTAA-------ATTG-----TCAAACTATTATAATCGTTAA
DroYak_CAF1_left   GATCTATTTGTGGGTCCAAAAG-T-TTAT--GACAACAAAATTGAGTT-------TTGTTAA--GTTACCGAACCAACATGGTCG
DroWil_CAF1_left   TGTGTGTTTGGGCGTATGAGCATT-TTAAGTCAAA--TAATATTATGC-------AAAAAGTTTTATATTAAAAATATTTATTGT