CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroAna_CAF1_left   AACA-CTTTTC-TGAATTT-TATTTCAATATTCACTTTAACATCGATTAACATGTTAC-CTA-TTTAAAAGATAAATATT--TCTCTCC-TGTGAAAAAGAAAAAAAATTA-A-TCATCC
DroEre_CAF1_left   GCTA---CTGCAGTTTTATTGACAAACATTCATATTTTTACATGTGCCGGATGATTTA-GTA-AAAATATAAGTA--TATTAAATACAT-ATAGAAAAAATAAAAAAAGTA--TTTAACA
DroMel_CAF1_left   TCCA-T-ACAGGCTGACTTGAAATATCGCAT-AGCAACTACAGTTTCATTGATAAAAA-TTC-AAACATCTTTTA-CATCA-ATCCGAA-TAACAAAAAATTAA-AAAATTTTTTCA-CC
DroPer_CAF1_left   TAGTACGTCACAACTTTCCAAATAGCTTTAAAAGTA-AAACACAAATTGGTACAAAAAAAAA-ATGCGGAAA----TAGCT-CTGATCTGAAAGTTATTAAAAA-AAGTTAGTTTCA-TC
DroPse_CAF1_left   G--TACGTCACAACTTTCCAAATAGCTTTAAAAGTA-AAACACAAATTGGCACAAAAA-AAA-AGGCGGAAATAG-CAGCT-CTCATCTGAAAGTTATTAAAAA-AAGTTAGTTTCA-TC
DroSim_CAF1_left   CATT-TAGCTTATCTATATTTAAAAGGTTATAATT----ACATTTAAAAGTTGAAGCT-TCGGTGGCACGAAAAA--ATAAAATATTTT-CTTGCTTAGGAAAAAAAAG-----TCAACC
DroYak_CAF1_left   ATTT-A-TTGTTAAAACTCATATTTTTATATAAGCAGGAAGATTAAGTATAAAATTAA-AAT-ACATACATATAT-AAACA-AATAGAA-AAAAAAAGTACAAA-AAAGTATT--CAGCC
DroSec_CAF1_left   ATTGACATCAAATAAATACATTTAC--TTATATATATTTTCACATCAATCCGAATAAT-AGT-TCAAATAAATAA-AAAA--TCCAAAT-AGAAAAATTAAAAAAAAATTA-T-TTCACC

DroAna_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGCTGAAAGCCGTGCGCCCAAAATGCTTAC-TTT-TGCTTGAGCCGA
DroEre_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGTTGAGCTGAGTGCGTCCAAAGAGACTCT-TGTGACTCACAGGAGA
DroMel_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGTTGAATATAGTCCGTCCGAAGAGCCTCT-TGTGAGCCACAGGAGG
DroPer_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGCTGAACGTCGTGCGGCCATAGAGACCTCTTCTGGCTCGAGGGCGT
DroPse_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGCTGAACGTCGTGCGGCCATAGAGACCTCTTCTGGCTCGAGGGCGT
DroSim_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGCTGAGCATAGTTCGTCCGAAGAGCCTCT-TGTGCGCCACAGAAGG
DroYak_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGTTGAGCTGAGCGCGTCCAAAGAGGCTCT-TGTGACTCGCAGGAGG
DroSec_CAF1_left   TGTTTCCGCCCGGGATCGAACCGGGGGCCTTCTGCGTGTTAGGCAGATGTGATAACCGCTACACCACGGAAACAGCTGAGCGTGGTTCGTCCGAAGAGTTTCT-TCTACGCCACAGAAGG

DroAna_CAF1_left   ATTCCTTACGGAAAAAACTATTT--CAACGTGAAAAGATAAAGCTGAATGTGTCGGGATATA-CGCACAAGCATATT
DroEre_CAF1_left   CCTTAGGTTG-GGCAAAGT-GCCAGTAAATTG-AATCAAAGCGGAAATCTAAACTAATCTAA-AGTTGATTCAAAGG
DroMel_CAF1_left   CTTTCGGTTG-GGCAAAGT-GCCAGTAAATTG-AATCAAAGCGAAAATCTAAACTAATCATA-AGTGGGATCTAAAT
DroPer_CAF1_left   CTGCTGTTTG-GGCAAGCT-GCCAGAAAACCA-TCTCAAATCATAGCGGAAATTGAAATTAATCGA--GCCACCGCC
DroPse_CAF1_left   CTGCTGTTTG-GGCAAGCT-GCCAGAAAACCA-TCTCAAATCATAGCGGAAATTGAAATTAATCGA--GCCACCGCC
DroSim_CAF1_left   CTTTCGGTTG-GGCAAAGT-GCCAGTAAATTG-AATCAAAGCGGAAATCTAAGCTAATCATA-AGTGGATCTAAATG
DroYak_CAF1_left   CTTTCTATTT-GGCAAAGT-GCCAGTAAATTG-AATCAAAGCGGAAACCTAAACTAATCTAA-AGTTGATCCAAATG
DroSec_CAF1_left   CTTTCGGTTG-GGCAAAGT-GCCAGTAAATTG-AATCAAAGCGGAAATCTAAGCTAATCATA-AGTGGATCTAAATG