CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   ATCGCTTATC--TAATTGCTGTTCT-ATAAATAGCCCGCAGCCCAAGCCGATAAATTGTCGCACACTCGCC-AGTGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCGAAA
DroMel_CAF1_left   ATCGCTTATG--TAATTGCTGTTCT-ATAAATAGCCCGCAGCGCAAGGGGATAAAGTGTCGCCGAATCGCT-AATGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCGAAA
DroSec_CAF1_left   ATTGCTTATC--TAATTGCTTTTCC-ATAAATAGCCCGCAGCGCATGAGGATAAAGTGTCGCCGAATTGCC-AAAGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCGAAA
DroSim_CAF1_left   ATTGCTTATC--TAATTGCTGTTCT-ATAAATAGCCCGCAGCGCATGGCGATAAAGTGTCGCCGAATTGCC-AAAGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCGAAA
DroVir_CAF1_left   TTATATTATT--ACTTAATGATCCT-TAACACAAGAATGATATGATCTG-AAATTCTGTCACTGTGGTTAATCATGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCATAT
DroYak_CAF1_left   GTTGCTTATC--TAATTGCTGTTCT-ATAAATAGCCCGCAGTTCAACAGGATAAATTGTCGCCTGATTGCC-AATGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCGAAA
DroMoj_CAF1_left   ATTTTTAGATTTTAAAATATGATCCTTGCTACTGATTTCATATTTACACATTTGCCA-AC-CCTC-GCCAA-CGTGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGAGCTGTA

DroEre_CAF1_left   GTCTCTTACCCTTCGCAGCAGGGTT--CG--ATTGAGCGTTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAAATCTTTTT-ACAAATTCCC----TTTTTGCTGAA
DroMel_CAF1_left   GTCTCTTACCTTTCACAGCAAGGTT--CG--ATTGAGCGTTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAAGTTTTTTT-TTTTTAATATTCACAGTTTACTCTT
DroSec_CAF1_left   GTCTCTTACCTTTCACAGCAAGGTT--CG--ATTGAGCGTTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAATTATTTTT-TTTTAATTATTCACAGTTTACTCAA
DroSim_CAF1_left   GTCTCTTACCTTTCACAGCAAGGTT--CG--ATTGAGCGTTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAATTATTTTT-TTTTTGTGAAT---AATTAATTCAA
DroVir_CAF1_left   AACTCTTGCCTTTCGTAGAAAGGTGTTTG--AATGAGAATTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAAATATTTTT-GGTACTATTTGCAAAAATTAATTTA
DroYak_CAF1_left   GTCTCTTACCCTTCGCAGCAGGGTT--CG--ATTGAGCGTTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAATTATTTTTTACAAATTTCA---CATTTTGCGCAA
DroMoj_CAF1_left   AACTCTTGCCTTTGATACAAAGGTG--AAAATGTGAGCGTTCTGGTCCTCTCTGAGGGCGTGGGTTCGAATCCCACTTCTGACAAATTTCTTTT-TACAAACTTAA---ATATTCTCTAT

DroEre_CAF1_left   TTTGCAAACAATTCAGTT-GAAATGCAACTAGTAATT--A---AAATGAGTAATTTCTCGGTTTAATTCGATTT--AAATTAAATATAA
DroMel_CAF1_left   GGAAGAGTTTAGA-AACA-ATTCCAAATTCATAAAAT--T---CGATTATTAAATGTGTTGGG--ATTCCTATT--AACTATTATAATT
DroSec_CAF1_left   TGTCAACGATAATAA-TT-------TTATATGCATAAATCGTAAAGTTTTTGTACACTTGC-TGTATCCACAAT--TCCCCTCATTCTA
DroSim_CAF1_left   AGTCAAATTAATAAAATT-CGATTATAATTTTATTTG--C---ATAAATCGTAACATTTTTATACACTTGCTGT--ATCCACGATTCCC
DroVir_CAF1_left   TTTTATTTTTTTTTT-CCTTTCAAATATGAATATCTCTGCAGTTTAAGATATATTCTGAGC-TTATTATAAAAGCAAAAAAAGAAACAA
DroYak_CAF1_left   TTTCTAAACAAGTAA-GT-TGATATGATAGTAATCGA--A---ATACTCAATTACTCCACTTAATTTGATTGAA--ATTAAATATAACC
DroMoj_CAF1_left   ATTATTTTTAATTTATTT-AGAAGGTAATTTGTCAAT--AATTATTATTTTGTTTGCA-AC-AGAAAGTTGA-G--TAAAATGCAATAC