CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   T---ATACAGTAAACCCGTTTGCAGCCAAAAGCTATTAAG-TCCACAGCCACATGCAACTCACCTTTTGACCAGTCTCGCAGTGAAGTTCGAATTTCGAACTTTTCTTTGATAAGCAGTA
DroMel_CAF1_left   CATTATACAGTAAACCCGTTTGAAGTCAAAAGCCATTAAG-TTG--AGACATATGCAGCTCACCTTT-GATCAGTCCTACAGTCAAGTTCGAATTTCGAACATTTCTTTGATAAACAGTA
DroSec_CAF1_left   CATTATACAGTAAACCCGTTTGAAGTCAAAAGCCATTAAG-TTC--AGACATATGCAGCTTACCTTT-GATCAGTCCTACAGTCAAGTTCGAATTTCGAACATTTCTTTTATAAACAGTA
DroSim_CAF1_left   CATTATACAGTAATCCCGTTTGAAGTCAAAAGCCATTAAA-TTC--AGACATATGCAGCTTACCTTT-GATCAGTCCTACAGTCAAGTTCGAATTTCGAACATTTCTTTGATAAACAGTA
DroYak_CAF1_left   T--TATACAGTAAACCCGTTTGAAGACCAAAGCTATTAGTCCAC--AGCCACATGCAACTCACATTTTAACCAGTCCAACAGCGAAGATCGAATTTCGAACATTTCTTTGATAAACAGTA

DroEre_CAF1_left   GTTTGGCGGCCGATATGCACCTGGCTCGTTGGTCTAGGGGTATGATTTCCGCTTAGGGTGCGGGAGGTCCCGGGTTCAAATCCCGGACGAGCCCAAGTAGTTTACGTTTTTTGTCATTTT
DroMel_CAF1_left   GTTTGGCGGCCAATATTCACCTGGCTCGTTGGTCTAGGGGTATGATTTCCGCTTAGGGTGCGGGAGGTCCCGGGTTCAAATCCCGGACGAGCCCAAGCTATTTACGTTTTTTGTA-ATTG
DroSec_CAF1_left   GTTTGGCGGCCAGTATTCACCTGGCTCGTTGGTCTAGGGGTATGATTTCCGCTTAGGGTGCGGGAGGTCCCGGGTTCAAATCCCGGACGAGCCCAAGTTATTTACGTTTTTTGTA-ATTG
DroSim_CAF1_left   GTTTAGCGGCCAATATTCACCTGGCTCGTTGGTCTAGGGGTATGATTTCCGCTTAGGGTGCGGGAGGTCCCGGGTTCAAATCCCGGACGAGCCCAAGTTATTTACGTTTTTTGTA-ATTC
DroYak_CAF1_left   GTTTGGCCGCCGATATTCACCTGGCTCGTTGGTCTAGGGGTATGATTTCCGCTTAGGGTGCGGGAGGTCCCGGGTTCAAATCCCGGACGAGCCCAAGATTGTTTACTTTTTTGCT-GCTA

DroEre_CAF1_left   -TGTGCTTCAGAATCAAAAGCACGAAATTCCT-GTACTCGCTAGCGCACTTTTCTC--CGTGTAGAGACTGCC-GGTGCCC-GGCG-CAT
DroMel_CAF1_left   -CATTGATATTCTTTTGTTGAATTAAATCTAC-AGAATTTTTGTATTTCGGAGCGT--ATTTT-TCTCAGTGTCCAGACTG-CCAATGCC
DroSec_CAF1_left   -CAATGACATTTTTGTGTTTAATCAAATCTAC-CGAATATTTATATTTTGGAGAGT--ATTTT-TCTCAGTGTCCAGACTG-GCACTGCC
DroSim_CAF1_left   -CAATGACATTTTTGTGTTGAATGAAATCTAC-CGAATATTTATATTTTGGAGAGT--ATTTT-TCTCAGTGCCCAGACTG-GCACTGCC
DroYak_CAF1_left   ATTGCGCTACGAAATTGTAT-GAAATTCTTGTAGTTGGTAGCGCACTTTTCTCCGTGTACAGA-CTGCCAGTG-CCCAGTGCCAGTG--G