CLUSTAL W --- LocARNA 1.4.8 - Local Alignment of RNA


DroEre_CAF1_left   GATGCAAATAAATTTAAAGAAGCAATAATAAAA-ACGGACCACATTGCTACTG-CATTCCATGG-ATTGTC--GGAA-GTGTTAATTATTTAATTTCTAATTACGTACAATTAAA-TCTA
DroSim_CAF1_left   TAAG-AAAGAATAAAAAAGAACAA-TTTTACAA-CTGCATTGTTCAACCTGCA-TAGTTTTTGAATTCAATATAGGA-ATAGGAA---ATGTCAATT-AATTAATTGTTAATTAAATATA
DroYak_CAF1_left   ATTT-AAGGAAGCAATAATAAAAA-AAGGATGT-TGCGACTGCATTGTCTTGC-AATTCCAGGC-ATTGTTAGAAATGTTTGCGG---TTAATTAAC-AATAATTAGTTAATTAAATATA
DroMel_CAF1_left   ATCACTTCCTTGTTCTACCTGTAT-AGTTT-TCCATTTA-AA-AGA-TTGTAAGAAATGT-TAATTAATTAATTG-T-TGAG-TA---AATATAATT-AATAAATGAATTGTTAATTAAA
DroSec_CAF1_left   TATTTTTATGTGTAAATATATTTA-AGAAAGAATAAAAAGAACAAT-TTTAGA-TAGAAATTGAAATCAATAGAT-T-ATAGGAA---ATGTTAATT-AATTAATCGCTAATTAAATGTA

DroEre_CAF1_left   ATTAATACTTTTGAACAAGAAAAGTTA-AAAAAAAATTCTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCT
DroSim_CAF1_left   ATTAACATTCTTGAACAACAAA----------AAAATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCT
DroYak_CAF1_left   ATTAGTACTTTTAAACAAGAAAAGTTTTTCAAAAAATTCTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCT
DroMel_CAF1_left   TATAAT------------ACATTTTTGAACAAAAAATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCT
DroSec_CAF1_left   ATTAA-------------TTTTTGAACAACAAAAAATCTTTGTCAGAAGTGGGATTCGAACCCACGCCTACAGAGTAGACTGCGACCTGAACGCAGCGCCTTAGACCACTCGGCCATCCT

DroEre_CAF1_left   GACACATAAGATGAGCATACCAAATGCGCGTTTTCCATGGCGCTCGCTCATTCGTTTGACCTTCATGTGGTTCTGCTATAA-AAAGTGGTTTACAAAAAACTGCCATAACTCGCGCTGCT
DroSim_CAF1_left   GACACATGGGATGAGCATACCAAATGCGCGTTTTCCATGGCGCTCGCTAATTCGTTCGCCCTTCATATGGTTCTGCTATAA-AAAGTGGTTTACAAAAAACTGCCATAACTCTCGGCCTG
DroYak_CAF1_left   GACACATGAGATGAGCATACCAAATGCGCGTTTTCCATAGCGCCCATACATTCGTTTGCTCTTCATATGGTTCTGCTATAA-AAAGTGGTTTACATAAAACTGCCATAACTCGGGCTGAT
DroMel_CAF1_left   GACACATGGGATGAGCATACCAAATGCGCGTTTTCCATGGCGCTAGCTAATTTGTTCGCCCTTCATATGGTTCTGCTATAAAAAAGTGGTTTACAAAAAACTGCCATAACTC--GGCCTG
DroSec_CAF1_left   GACACATGGGATGAGTATACAAAATACGCGTTTTCCATTGCGCTCGCTAATTCGTTCGCCCTTCATATGGTTCTGCTATAA-AAAGTGGTTTACAAAAAACTGCCATAACTCTCGGGCTG

DroEre_CAF1_left   TTAA-CTG
DroSim_CAF1_left   ATTT-AAC
DroYak_CAF1_left   TTAA-CTG
DroMel_CAF1_left   ATTTGCCA
DroSec_CAF1_left   ATTT-AAC